Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20830 228 / 1e-71 MCD1 multiple chloroplast division site 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030727 [exp] 585 / 0 AT1G20830 303 / 6e-101 multiple chloroplast division site 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255300 [exp] 286 / 7e-94 AT1G20830 330 / 1e-111 multiple chloroplast division site 1 (.1) Potri.002G006300 [exp] 266 / 6e-86 AT1G20830 331 / 7e-112 multiple chloroplast division site 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013209 pacid=23166626 polypeptide=Lus10013209 locus=Lus10013209.g ID=Lus10013209.BGIv1.0 annot-version=v1.0 ATGGCGACTCTCCATTTTCCTTCATTTTCAATTCAGCCCTCTCCGCGCTTTCCTAATCGCTGCCTTCATCCGAACATAGCGCAGCTCAGGAGTTGCAATC CTCCGAAATCTAAATCCGGGCTGAAATTTCACTTGCTTAAAGCAGTACCTAGAGATTCTGTTAACCTGGCGGATAGTGGCATTGACGCAACAGCTGGCCA TCCCGTTGGCCCGGCAGACGGAGGATTCGAAGTAGCAGCAGCATGCGACGGCGTTAGCCCGGCAGACGGAGAATTTGAAGCAGCAGCTAGCGATCCCGTT ATCTCGGCAGACGGAGGATCAGCTGATTCTCCAGGTGAGATAGTTAAGAGCGATAACGTTGACAACACCTCATATTCCAAACGCATTATCCCAAAATTTC AAGCCGCAGTGTCCCAACTTACTCCTTTCGTTTCTTCGATGAGAACACACGCCGGAGGTAACTATGTGATCTGGGTATGCACTGGAACTGCATTCTTGTT CATTGCCATGAGAGTTATCATTCATGTTACTCGAAAACCAAAGCTTAGGCGTCCAGGGTCAGTGGCTGATCTTGTTCGACGTGGCCAGCTGAGATCTGAT CGAAGAGGCATCCCGAGATCTCCCGAATATGATGACCCATTCAACAACCCGTTCGTGAAAGCTGGCAAGAGTGACTCAACGGTGGAAGTGTGTGGCAAGG TTTATAAGTTGGCTCCGGTTACACTCACAAAGGAAGAACAGGCTACTCATCAGAGGAGGAGGTCAAGGGCATATCAATGGAAGAGGCCGACAATGTTCCT TAAGGAAGGCGATTCAGTACCCAATGATGTCGATCCTGATTCAGTCAGATGGATCCCTGCAAATCATCCTTTTGCGACTACCACCAGTGAAATCGATGAA AACTTGGCTCAAACTAATGTCCACCAAAAGCATGGTGTTCCGTACCGAATACAGGCCGAGCATGAGGCGCTCCAACAGAAACTAGAAGCATTACAACAGG GGCAAAAGCTGAATAAGTTTTTCGTTGACAATGGACATGGGAAAGGGAACGAAAGATCGTCGAGGCTGCATCCCAAGTCAAGCGAGACCATGGAGCAGAA TTCTTCAAATTCTGGAAACAGCAATTCATCCTCTGATGATCCTCAGAAACCTTACTAG
AA sequence Show only first row Show all	>Lus10013209 pacid=23166626 polypeptide=Lus10013209 locus=Lus10013209.g ID=Lus10013209.BGIv1.0 annot-version=v1.0 MATLHFPSFSIQPSPRFPNRCLHPNIAQLRSCNPPKSKSGLKFHLLKAVPRDSVNLADSGIDATAGHPVGPADGGFEVAAACDGVSPADGEFEAAASDPV ISADGGSADSPGEIVKSDNVDNTSYSKRIIPKFQAAVSQLTPFVSSMRTHAGGNYVIWVCTGTAFLFIAMRVIIHVTRKPKLRRPGSVADLVRRGQLRSD RRGIPRSPEYDDPFNNPFVKAGKSDSTVEVCGKVYKLAPVTLTKEEQATHQRRRSRAYQWKRPTMFLKEGDSVPNDVDPDSVRWIPANHPFATTTSEIDE NLAQTNVHQKHGVPYRIQAEHEALQQKLEALQQGQKLNKFFVDNGHGKGNERSSRLHPKSSETMEQNSSNSGNSNSSSDDPQKPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	0	1
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	3.5	0.8359
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	3.9	0.8249
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	6.2	0.8359
AT1G53800			unknown protein		Lus10003930 [exp]	7.7	0.8480
AT3G19650			cyclin-related (.1)		Lus10011420 [exp]	9.7	0.7921
AT4G22320			unknown protein		Lus10032566 [exp]	11.5	0.8151
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	13.9	0.7989
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	15.8	0.8057
AT1G75060			unknown protein		Lus10017506 [exp]	18.3	0.7995
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10043188 [exp]	19.9	0.8029

Compare expression of checked genes

Lus10013209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.