Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 160 / 7e-50 RING/U-box superfamily protein (.1) AT1G76410 157 / 6e-49 ATL8 RING/U-box superfamily protein (.1) AT2G17450 114 / 7e-32 RHA3A RING-H2 finger A3A (.1) AT5G05280 105 / 2e-28 RING/U-box superfamily protein (.1) AT4G35480 105 / 4e-28 RHA3B RING-H2 finger A3B (.1) AT3G18773 104 / 8e-28 RING/U-box superfamily protein (.1) AT1G49220 102 / 1e-26 RING/U-box superfamily protein (.1) AT1G49200 96 / 3e-24 RING/U-box superfamily protein (.1) AT1G49210 93 / 3e-23 RING/U-box superfamily protein (.1) AT1G49230 89 / 1e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030728 [exp] 280 / 6e-97 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10016040 [exp] 202 / 3e-66 AT1G20823 202 / 4e-66 RING/U-box superfamily protein (.1) Lus10025162 [exp] 166 / 2e-52 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10005814 [exp] 105 / 5e-28 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10005815 [exp] 100 / 8e-26 AT1G49230 170 / 3e-53 RING/U-box superfamily protein (.1) Lus10005817 [exp] 100 / 1e-25 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10033515 [exp] 98 / 9e-25 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10006788 [exp] 97 / 9e-25 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10020859 [exp] 98 / 1e-24 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G006400 [exp] 183 / 1e-58 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 165 / 9e-52 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 137 / 8e-41 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 114 / 5e-32 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 106 / 1e-28 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 98 / 3e-25 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 97 / 8e-25 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 94 / 6e-24 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 92 / 4e-23 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 92 / 4e-23 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013210 pacid=23166671 polypeptide=Lus10013210 locus=Lus10013210.g ID=Lus10013210.BGIv1.0 annot-version=v1.0 ATGACTCGTCCACTCAGATCCCTCAGCTCCCTGAACCCCTCCTCCGCCACACCAGCAGCAGACACCAACCCCGACCAGCGCACAGCTCCAGTGGTAGATT CCGACTTCATCGTCATACTAGCAGCTCTCCTCTGCGCCCTGATCTGCGTCCTCGGCCTAGTCGCCGTAGCCCGCTGCGCCTGGATTCGCCGCTTATCCTC TTCCGCCGGCTCCGGATCCCGGCCACAGCCGACTACAAACTCCTCCTCCGCCAACAAGGGGGTCAAGAAGAAAGTACTCCGCTCCCTCCCCAAGGAGACG TTCTCCCCTGATTACGCCGCCAAGTTCCCCGATTGCGCCATCTGCTTATCCGAATTCGCAGCGGGTGAGGAGTTGAGAGTGCTCCCTCAGTGCGGCCATG GCTTCCACGTGAGCTGCATCGACACCTGGCTGGGTTCTCATTCCTCGTGCCCTTCCTGCCGCCAGATACTGGTTGTAACGAGGTGCCAAAAGTGTGGCGG CCTCCCCCCGCCGACGCCGACGACGACGGGTGCCAGCAGCGGGGAAGGATGTGGTGAAACGGAGGGTAGATTGAAAACGCGAGAAGATGATGGGAATAGA TTCTTACCCTAG
AA sequence Show only first row Show all	>Lus10013210 pacid=23166671 polypeptide=Lus10013210 locus=Lus10013210.g ID=Lus10013210.BGIv1.0 annot-version=v1.0 MTRPLRSLSSLNPSSATPAADTNPDQRTAPVVDSDFIVILAALLCALICVLGLVAVARCAWIRRLSSSAGSGSRPQPTTNSSSANKGVKKKVLRSLPKET FSPDYAAKFPDCAICLSEFAAGEELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCQKCGGLPPPTPTTTGASSGEGCGETEGRLKTREDDGNR FLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20823			RING/U-box superfamily protein...		Lus10013210 [exp]	0	1
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	1.0	0.8915
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	11.0	0.8011
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	13.4	0.7955
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	14.0	0.7701
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	14.2	0.8083
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10002480 [exp]	18.0	0.7249
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	18.2	0.8079
					Lus10020211 [exp]	19.6	0.7206
AT1G05700			Leucine-rich repeat transmembr...		Lus10023463 [exp]	22.1	0.6939
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	24.2	0.8045

Compare expression of checked genes

Lus10013210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.