Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24360 663 / 0 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT2G17520 573 / 0 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT3G11870 292 / 2e-88 Endoribonuclease/protein kinase IRE1-like (.1) AT2G05060 79 / 9e-16 Protein kinase superfamily protein (.1) AT3G22750 80 / 1e-15 Protein kinase superfamily protein (.1) AT1G09000 80 / 4e-15 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT5G66850 79 / 6e-15 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G59410 80 / 7e-15 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT3G63260 77 / 9e-15 ATMRK1 Protein kinase superfamily protein (.1.2) AT1G54960 77 / 2e-14 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030730 [exp] 1641 / 0 AT5G24360 706 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10035979 [exp] 685 / 0 AT2G17520 618 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Lus10009339 [exp] 79 / 1e-14 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10042122 [exp] 77 / 2e-14 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10019635 [exp] 77 / 3e-14 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10016768 [exp] 77 / 4e-14 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10034060 [exp] 77 / 4e-14 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 77 / 4e-14 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10008764 [exp] 76 / 5e-14 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254000 [exp] 1129 / 0 AT5G24360 722 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.007G059000 [exp] 750 / 0 AT2G17520 673 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Potri.002G007201 [exp] 255 / 9e-80 AT5G24360 199 / 6e-60 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.002G007150 [exp] 142 / 3e-39 AT5G24360 56 / 1e-09 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.007G128300 [exp] 85 / 2e-16 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.007G039800 [exp] 83 / 4e-16 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G033400 [exp] 82 / 9e-16 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.010G247400 [exp] 79 / 7e-15 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.005G135100 [exp] 79 / 1e-14 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.013G022700 [exp] 78 / 2e-14 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06479 [flax] [poplar] Ribonuc_2-5A Ribonuclease 2-5A CL0186 [flax] [poplar] Beta_propeller PF01011 [flax] [poplar] PQQ PQQ enzyme repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013212 pacid=23166669 polypeptide=Lus10013212 locus=Lus10013212.g ID=Lus10013212.BGIv1.0 annot-version=v1.0 ATGAAGCGATGTCTAATGCTCCGTATGTTGATGATGGTGCTGTTATCGCCACTGATCAGGTGCATCTCGAGCTCAGCAGCAGCCAGCTCCCACTCATTTC TCACCGATCAGACTAGCCGCGCCTCCAGCCCCTACAAGTCTCTTCTCCCGCCGGTTCCTAAGCGTGAGTTTGCGGTTGTGGCTGCTTTGGATGGAACTAT TTATTTGGTGGATGCTACCTCGGGGAAGATTCGCTGGTCTCTACCTACTGGTTCCCCTATATATTCTTCTTATCAGGCTACACTTGATGATGACGATGAT GATAAGCATAATGCATCTGGATTGAGCAACGACTTATATTATGTCGACTGTGGGGATGATTGGGACCTCTATCTGCATAGCAAGAATTTAGGGAAACTGG AAAAACTCTCTCTAAGTCCTGATGAGTACATTAGGAGGACACCACACATATCAGAAGATGGTGAGATTACATTGGGGTCTAAAAAGACTACTGCTTTCCT AGTTGATGCCAACACTGGGAGGATAGTTCGCTCTTTTAATTTGGATATTCCTCCTAGTGCGGAATTTCAAAGTGCTGAAGAAACTGCCCTTCGTTTGGTA AATGGCCGTGACCGGTTGTTGGAATCAGGTGTTAATGACTTGGGAGCTATTGAGAGTCTGGTTTATATTACAAGGACAGACTATGTGCTACAACACTACT CGCCTAACTCTAGCAAAGTCTTGTGGAATGTGGCATTTGCAGAGGTTGAGGCTGAGTTTCGATGTCAAGATGGTGAGGGTTTCATTGATGAGATTTCTCC GGATGAAAATATGGGAACAAAGAACACAGAATGGCAATTTCCTTGTCAACTGAAGACTGTTGCTCTGCGGATTCGTGACCAGAACTCGTTACCGTTTGAG AAAATAGCAATTAGTCATCTCGGACTTGGAGGCAGACCTCGGTTCTTACCTTCCAAGAATCACATTCCGGTACTAGGACCTGTTTATAGAGTTCCATCAG CTCTTCCCACTAATGGAGGCAGATCTACTCATTTTGCATTGCCCTCATCTGATGGCATTGGAGGAGGGAACAATTATGTAACAAATAGTACCAGTTGGTC TTCGGAAATGTTCACAAAGTCTCAGATGTGGTCCAGCATAGCAACTATTCTTTCCATTTTCGGTTTCATCATCTACAATTATCTAGCTGGTAAGAAACAG AGTAAAGTGCAAAATGGAACCCCCAAAAAGAAGAAAAATAAAAGACCCGGAGCAGGAAACAACAAGAGCCAGTCTTCAAAAACAAATGTTTCTTTGGAAA ATAAGGTTCAAGACACTGATGAACCTGAGGATAGCGAAGGGGTTAAGAGAAAGGTAAAACAGTTTCTGACTGATATTGTTGATGGCCGAGAAGATGGACG CAAAATTGGTAGGTTATTGGTTTCCAACAAAGAGATTGCGAAGGGTAGTAATGGAACAGTTGTGCTCGAGGGGATCTATGATGGCCGTCCTGTAGCTGTG AAACGCCTTGTGCAGACGCATCATGATTTTGCTGTCAAAGAGATTCAAAACCTCATTGCTTCTGATCAGCATTCAAATATTGTTAGATGGTATGGTGTGG AGCATGATCAAGATTTTATTTATCTTGCTCTGGAGCGTTGCAGCTGCAGCTTAAGTGACTTTATTTACGCGCACTCTGGAACTTTTCAAAGCCAAATGTA TCCAGAGGGTCAAACATGCAACAGTTTGCCAGTGGCTACTGTTCGATTATGTACAACTCTACAGCAGAATAAGAATGTTGACTTGTGGAAGCCAAATGGT TATCCGTCCCCGCTTTTATTAAAACTTATGAGAGATGTAGTCTCTGGTCTTGCACATTTGCATGAACTTGGGATCATTCATAGAGACTTAAAGCCTCAAA ATGTCTTGATAATTAGTGAGAAAACATTTTGTGCGAAACTTTCCGATATGGGTATTAGCAAGCGCCTCCTTGGAGACGTGTCTTCCTTGACACTACATGC AACTGGCTATGGAAGTTCAGGTTGGCAAGCTCCTGAACAACTTCTTCAGGGGCGGCAAACTCGTGCAGTAGACTTGTTTAGTTTAGGATGTGTTCTGTTT TTTTGTATAACAGGGGGCAAGCACCCTTTTGGCGACAATATTGAACGAGATGTAAATATTGTGAATGATAAAAAAGATCTATTCTTAATAGAGAGTATAC CAGAAGCCATTGATCTACTATCTTCCCTCCTGGATCCCAATCCTGATAAAAGGCCTAAAGCTGAAGATGTTGTGGATCATCCCTTGTTCTGGACATCAGA GAAAAGACTGACATTTCTTCAGGATGTTAGTGATCGGGTCGAACTTGAAGACAGAGAGAGCGAGTCAGACCTTTTGAACGCATTAGAGAGCATCGGAACT GTCGCATTGGACGGGAAGTGGGACGAGAAAATGGAAGCTGCTTTCCTGAACAATATTGGCCGTTACAGGCGATACAAGTTTGACAGTGTCCGTGACTTGC TCCGCGTCATACGCAACAAGTCCCATCACTACAGGGAGCTCCCCAAAGAGATCCAGGAACTGCTGGGTTCGCATCCAGAAGGGTTTGAGGATTACTTTAC GGTGCGATTTCCGAACCTGATGATCGAGGTGTACAAGGTAATATGCAGGCATTGCAGGGACGAGGAGTTCTTCAGGAAATACTTGCAGAGCAATGTAGTT TAA
AA sequence Show only first row Show all	>Lus10013212 pacid=23166669 polypeptide=Lus10013212 locus=Lus10013212.g ID=Lus10013212.BGIv1.0 annot-version=v1.0 MKRCLMLRMLMMVLLSPLIRCISSSAAASSHSFLTDQTSRASSPYKSLLPPVPKREFAVVAALDGTIYLVDATSGKIRWSLPTGSPIYSSYQATLDDDDD DKHNASGLSNDLYYVDCGDDWDLYLHSKNLGKLEKLSLSPDEYIRRTPHISEDGEITLGSKKTTAFLVDANTGRIVRSFNLDIPPSAEFQSAEETALRLV NGRDRLLESGVNDLGAIESLVYITRTDYVLQHYSPNSSKVLWNVAFAEVEAEFRCQDGEGFIDEISPDENMGTKNTEWQFPCQLKTVALRIRDQNSLPFE KIAISHLGLGGRPRFLPSKNHIPVLGPVYRVPSALPTNGGRSTHFALPSSDGIGGGNNYVTNSTSWSSEMFTKSQMWSSIATILSIFGFIIYNYLAGKKQ SKVQNGTPKKKKNKRPGAGNNKSQSSKTNVSLENKVQDTDEPEDSEGVKRKVKQFLTDIVDGREDGRKIGRLLVSNKEIAKGSNGTVVLEGIYDGRPVAV KRLVQTHHDFAVKEIQNLIASDQHSNIVRWYGVEHDQDFIYLALERCSCSLSDFIYAHSGTFQSQMYPEGQTCNSLPVATVRLCTTLQQNKNVDLWKPNG YPSPLLLKLMRDVVSGLAHLHELGIIHRDLKPQNVLIISEKTFCAKLSDMGISKRLLGDVSSLTLHATGYGSSGWQAPEQLLQGRQTRAVDLFSLGCVLF FCITGGKHPFGDNIERDVNIVNDKKDLFLIESIPEAIDLLSSLLDPNPDKRPKAEDVVDHPLFWTSEKRLTFLQDVSDRVELEDRESESDLLNALESIGT VALDGKWDEKMEAAFLNNIGRYRRYKFDSVRDLLRVIRNKSHHYRELPKEIQELLGSHPEGFEDYFTVRFPNLMIEVYKVICRHCRDEEFFRKYLQSNVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	1.4	0.8749
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	2.0	0.8676
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	2.2	0.8288
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	4.2	0.8224
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	4.6	0.8521
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	6.3	0.8466
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	8.8	0.8174
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	9.8	0.8030
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	12.4	0.8132
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	14.7	0.7756

Compare expression of checked genes

Lus10013212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.