Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33700 497 / 9e-177 Protein phosphatase 2C family protein (.1) AT3G51470 439 / 2e-154 Protein phosphatase 2C family protein (.1) AT2G25620 310 / 5e-103 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 292 / 4e-96 Protein phosphatase 2C family protein (.1.2) AT3G17250 273 / 3e-88 Protein phosphatase 2C family protein (.1) AT1G48040 269 / 4e-87 Protein phosphatase 2C family protein (.1) AT5G10740 162 / 3e-46 Protein phosphatase 2C family protein (.1) AT5G24940 158 / 5e-44 Protein phosphatase 2C family protein (.1) AT1G43900 154 / 6e-43 Protein phosphatase 2C family protein (.1) AT4G31750 152 / 1e-42 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030731 [exp] 702 / 0 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 589 / 0 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 568 / 0 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 313 / 3e-104 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 312 / 4e-104 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10038058 [exp] 295 / 5e-97 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 290 / 3e-95 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1) Lus10009993 [exp] 289 / 9e-95 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10017106 [exp] 288 / 1e-94 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253700 [exp] 548 / 0 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 535 / 0 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 464 / 6e-164 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 460 / 3e-162 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 321 / 4e-107 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.006G248400 [exp] 312 / 4e-104 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 312 / 7e-104 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 305 / 5e-101 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 302 / 2e-100 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.002G190400 [exp] 293 / 2e-96 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10013213 pacid=23166673 polypeptide=Lus10013213 locus=Lus10013213.g ID=Lus10013213.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGCACCGATTTCTCCCCTCCGTATGGTTTCCTAGACGGCGGTGGTTGCAACAATTCCACTAACCACAAGGATGTCAATAGAAACAACAACA TCTCCCCCAACTCCGACGACAATTCCGACAAGCAAATCCCTAATGGTAGGCCTCCCCGCCACGTCAACAACACCATCTCCTCCACCAGGCTCCTCGCCGC CACCGATCTGGCAATGGATGTTGGGATTGTGGTGAATAAGTCGCCGTCCGACGACAAGTTAGATTTCTCACCGGTGTTCCGATCAGGCAGCTGCGCTGAA GAAGGCCCCAAGCGGTACATGGAGGATGAACATGTTTGCATAGATGATCTCAACCAACATCTCAGTTCCTCCACCGCTGAAGACTTCTCTTTTTGTCCAG GAGCTTTCTACGGGGTGTTTGATGGCCATGGAGGTACGGATGCAGCTTCATTTGTTAGAAAGAACATCTTGAGGTTAATAGTTGAGGACTCTCAGTTTCC TATATGCGTGGAGAAGGCGATTAAGAGTGCTTTTGTGAAAGCTGATTTCGCATTTGCCGACGATAGTTCCCTTGATATCTCCTCAGGCACCACTGCTCTA ACTGCCCTTATGCTTGGACGCACGTTGATTATCGCTAACGCTGGGGATTGTCGAGCAGTGTTGGGAAGACGAGGAAGAGCGATCGAGATGTCCAAAGACC ACAAGCCGAACTGCACATCGGAAAGACTGAGAATAGAGAAGCTCGGTGGGGTTATTTATGATGGATACCTCAACGGTCAGTTGTCTGTTTCTCGTGCACT CGGAGACTGGCATATGAAAGGGTCGAAAGGTTCCGCATGCCCCTTAAGCGCGGAACCCGAGTTGCAGGAAACAAATTTAACCGATGAAGACGAGTTCTTG ATAATGGGGTGTGACGGCCTGTGGGATGTAATGACTAGCCAATGTGCAGTGTCAATCGTGCGGAAAGAGCTCATGTTACATAACGATCCCGAAAGATGTT CGAAACAGTTGGTCAGGGAGGCACTCAAGCGCAACACTTGCGATAATCTAACCGCCATAGTAGTGTGCTTCTCGCAAGATCCCCCTCCTCGGATCGAGAT CCCTCAGACACGAGTTCGGAGAAGCATATCGCTCGAAGGTCTGAATTTGCTGAAGGGTGCGCTGGAGCTGGATGGCAATTCATAA
AA sequence Show only first row Show all	>Lus10013213 pacid=23166673 polypeptide=Lus10013213 locus=Lus10013213.g ID=Lus10013213.BGIv1.0 annot-version=v1.0 MAAGTDFSPPYGFLDGGGCNNSTNHKDVNRNNNISPNSDDNSDKQIPNGRPPRHVNNTISSTRLLAATDLAMDVGIVVNKSPSDDKLDFSPVFRSGSCAE EGPKRYMEDEHVCIDDLNQHLSSSTAEDFSFCPGAFYGVFDGHGGTDAASFVRKNILRLIVEDSQFPICVEKAIKSAFVKADFAFADDSSLDISSGTTAL TALMLGRTLIIANAGDCRAVLGRRGRAIEMSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVSRALGDWHMKGSKGSACPLSAEPELQETNLTDEDEFL IMGCDGLWDVMTSQCAVSIVRKELMLHNDPERCSKQLVREALKRNTCDNLTAIVVCFSQDPPPRIEIPQTRVRRSISLEGLNLLKGALELDGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	0	1
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	1.0	0.8860
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	1.4	0.8665
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	4.6	0.8620
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	6.0	0.8487
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	8.7	0.8564
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	10.0	0.8551
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	10.2	0.8347
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	11.6	0.8273
					Lus10038116 [exp]	12.6	0.7966
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	12.6	0.8322

Compare expression of checked genes

Lus10013213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.