Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42480 105 / 7e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030732 [exp] 131 / 9e-40 AT1G42480 210 / 4e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253600 [exp] 112 / 3e-32 AT1G42480 201 / 2e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11938 [flax] [poplar] DUF3456 TLR4 regulator and MIR-interacting MSAP
Representative CDS sequence Show only first row Show all	>Lus10013214 pacid=23166676 polypeptide=Lus10013214 locus=Lus10013214.g ID=Lus10013214.BGIv1.0 annot-version=v1.0 ATGGCGTTGCTGGTGCCGGCCGTTTTGCTCCTCCTTACAATCACGGCGGTTTCCGCCGCCGACAACAAATGCGGCGCTTGCAATGCTGTTGCGGAAAAGC CGAAGAATCATCTTGATATGAGATATCGCCTAGACTCTAAAGGCCAACGCGAAGGGAAGGTAATCGATTACAGAGTCAGCGATCTGAGAGTTGTTGAACT GTTGGATGGGCTTTGCGACAAGATGCAGAGTTATACACTTGAGAAAACAAGCAAGAAGCTCGTGCGTATGCAAAAGAGATGTCATCCTATTGTGGAAGGT AAGGTGGAACGGGGTCCTTTCATTTCCTCTTTCTTCCTTATCATTGCAACTTTACTACTGAGCTGCTGTTATGATTTTTTCGGTCCAAAGACATTGAATC AAGTTGCTTAA
AA sequence Show only first row Show all	>Lus10013214 pacid=23166676 polypeptide=Lus10013214 locus=Lus10013214.g ID=Lus10013214.BGIv1.0 annot-version=v1.0 MALLVPAVLLLLTITAVSAADNKCGACNAVAEKPKNHLDMRYRLDSKGQREGKVIDYRVSDLRVVELLDGLCDKMQSYTLEKTSKKLVRMQKRCHPIVEG KVERGPFISSFFLIIATLLLSCCYDFFGPKTLNQVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42480			unknown protein		Lus10013214 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020358 [exp]	1.7	0.5998
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10002042 [exp]	7.3	0.5455
AT2G34930			disease resistance family prot...		Lus10016326 [exp]	19.0	0.4674
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10008413 [exp]	21.9	0.5169
					Lus10010518 [exp]	29.5	0.4605
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	38.4	0.4782
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	93.6	0.4328
					Lus10001379 [exp]	111.3	0.4295
AT4G02210			unknown protein		Lus10032996 [exp]	114.7	0.4034
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10000746 [exp]	115.7	0.4295

Compare expression of checked genes

Lus10013214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.