Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42350 639 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42360 635 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 63 / 2e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 58 / 1e-08 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G24760 55 / 9e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G15710 52 / 9e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 52 / 1e-06 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G24540 49 / 5e-06 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 49 / 7e-06 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030733 [exp] 624 / 0 AT5G42360 388 / 1e-129 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 74 / 8e-14 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 72 / 3e-13 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 62 / 5e-10 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003029 [exp] 60 / 3e-09 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019425 [exp] 60 / 3e-09 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 57 / 4e-08 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 55 / 1e-07 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10007855 [exp] 54 / 2e-07 AT3G61590 531 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253500 [exp] 813 / 0 AT5G42360 687 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G007700 [exp] 811 / 0 AT5G42350 718 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 76 / 1e-14 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 62 / 3e-10 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 59 / 3e-09 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.004G112400 [exp] 56 / 6e-08 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 53 / 4e-07 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 52 / 8e-07 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 52 / 9e-07 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 52 / 1e-06 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013215 pacid=23166602 polypeptide=Lus10013215 locus=Lus10013215.g ID=Lus10013215.BGIv1.0 annot-version=v1.0 ATGTTCCCGGAAGGCGTTGTTGTTAAAGGAGAGGCCGATTTGGAGGCTTCAACTGTTTCACGCCGTCTCGTTAGGACCGTTAGCCAGAAGCTCAAGAAGA AGACTGCTACTCTCCAGGATCTGGATTCTCTCACCAATAACGACGTTGCTTCCGGAATTTCCTTGAAATGTCTTACTCTGATGGTTCGCGGTGGTGGCTG CAAAGTTGGCGCCGATACAACCGGCGATGATTTCCCCGGCGGAGATATCGGTGGCCGGAGGAGATCGTCAATGTCTAGCGAGGAAGCTAGCAGCAGGACT ACTCCTTACAGGCCAATTTGCGGTGGAGGGGAAGAAACTGGAGTGGATTGCTTCTCTTATGGAGTGAGAGATAAGTTCTGGAAGAAGAGCATTAGGAAGC TTGAAGATCGTCCTACTCCAATGATGGATCATGACAGCAGTAGCAAGCTGCACATCTTCCTTCCTGATGATGTTTTGGAGCTCTGTTTGGTAAGGCTTCC TTTAACCAGTCTCATGAATGCCCGCCTTGTTTGTAAGAAATGGAGGCATTTGACAACTACTCCTCGGTTCTTGAGGATGAGGCTGGAAGGTTGGTATAGG AATCCCTGGCTGTTTCTGTTTGGCAGTGTTAAGGACGGATTATGTTCAGGTGAAATACATGCTTTTGATACTGTTCAACACCAGTGGCATAAAATTGACG CTGAGATTTTGAAAGGAAGGTTCATGTTCTCCATTGCAAGCGTTGGTGAAGATGTATACATTGTTGGGGGGCGATCCAGCCTGGCTAGATCCGGGAGGGT GGATTGGAGCTCGTTCAAGACGCATAAGGGTGCTATGGTGTTTAGCCCTGTGAATAAGTCATGGCGTAAAGTCGCCTCGATGAGGTACGCTAGATCAATG CCGGTCATTGGTGTATCCGAGGTGAATGCAGATTTCTCAGTTGGAAATCAGAGTCATCGCCAGGATAGGCGATTGACTCGTTCGCGAATCGGAGGGGTAT CGGATGTTTACGAGGATCCTCACAGGCTATCACTAAGGCGTTGTCAGTATCGGAACGGGGTTGATCATGTGAATGACATGTCGTTCCTAACCAACAGAAA GTCCAACAAGTTCACCAGACAAAGAAGTAGCGACCACTTGAATAATGGTAAAGGTTGTAAAAGGTTCATACTCATTGTCGTTGGAGGTATTGGATCATGG GATGAGCCATTGGACTCTGGAGAAATCTATGATCCTGTTTCGAACAAGTGGGTGGAAATCCAGAGGCTGCCTCTGGATTTCGGAGTAGTGAGTTCCGGTG TTGTTTGTAACAACATCTTTTACGTGTACTCGGAGATAGACAAGCTTATGGGATATGATATAGAGAAGGGATATTGGATGGGAATTCAAACTACTCCGTT CCCTCCTCGAGTTGTTGAGTATTACCCTAAGCTCGTCTCGTGTAATGATCGGCTGCTTATGCTCTCGGTCTCGTGGTGCGAAGGGGATGGCCAAATCGGG CAGAGGAACAAGGCTGTTAGGAAACTGTGGGAGCTGGATCTTGTGTGCCTTAATTGGAGCGAAATCTCGGTGCACCCGGATGCTCCAATGGACTGGAATG CGATCTTCGTTGCTGATAAAAGCCGTATATATGGAATCGAAATGTTCAAGATCTTTGGTCAGTTGTTGGATTTCCTGACTGTATGTGATTTCAGTGGCTC GGGAGCGAACTGGAGGCATATCTCGAGGAGTCACATGGCTCACGAGCTCGATGCTTCTTCGTGCATGACGAAATCGTTGGCAGTCGTGCATCTTTGA
AA sequence Show only first row Show all	>Lus10013215 pacid=23166602 polypeptide=Lus10013215 locus=Lus10013215.g ID=Lus10013215.BGIv1.0 annot-version=v1.0 MFPEGVVVKGEADLEASTVSRRLVRTVSQKLKKKTATLQDLDSLTNNDVASGISLKCLTLMVRGGGCKVGADTTGDDFPGGDIGGRRRSSMSSEEASSRT TPYRPICGGGEETGVDCFSYGVRDKFWKKSIRKLEDRPTPMMDHDSSSKLHIFLPDDVLELCLVRLPLTSLMNARLVCKKWRHLTTTPRFLRMRLEGWYR NPWLFLFGSVKDGLCSGEIHAFDTVQHQWHKIDAEILKGRFMFSIASVGEDVYIVGGRSSLARSGRVDWSSFKTHKGAMVFSPVNKSWRKVASMRYARSM PVIGVSEVNADFSVGNQSHRQDRRLTRSRIGGVSDVYEDPHRLSLRRCQYRNGVDHVNDMSFLTNRKSNKFTRQRSSDHLNNGKGCKRFILIVVGGIGSW DEPLDSGEIYDPVSNKWVEIQRLPLDFGVVSSGVVCNNIFYVYSEIDKLMGYDIEKGYWMGIQTTPFPPRVVEYYPKLVSCNDRLLMLSVSWCEGDGQIG QRNKAVRKLWELDLVCLNWSEISVHPDAPMDWNAIFVADKSRIYGIEMFKIFGQLLDFLTVCDFSGSGANWRHISRSHMAHELDASSCMTKSLAVVHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	0	1
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	1.0	0.9417
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	2.8	0.9041
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	3.9	0.8957
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	4.0	0.9036
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10038597 [exp]	4.9	0.8662
AT5G42360			Galactose oxidase/kelch repeat...		Lus10030733 [exp]	8.3	0.8687
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	10.2	0.8651
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	10.5	0.9038
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10033490 [exp]	10.9	0.8891
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	12.0	0.8744

Compare expression of checked genes

Lus10013215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.