Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 1034 / 0 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 1026 / 0 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 515 / 2e-166 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT5G43822 183 / 9e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42340 98 / 1e-20 PUB15 Plant U-Box 15 (.1) AT3G46510 93 / 4e-19 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 92 / 7e-19 PUB11 ARM repeat superfamily protein (.1) AT2G28830 85 / 2e-16 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 84 / 2e-16 ARM repeat superfamily protein (.1.2) AT1G27910 82 / 2e-15 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030734 [exp] 1308 / 0 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 475 / 4e-151 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10030735 [exp] 313 / 3e-100 AT5G43822 198 / 1e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040659 [exp] 306 / 2e-88 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 297 / 3e-85 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 277 / 2e-78 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 212 / 2e-56 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10029113 [exp] 204 / 2e-54 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10039402 [exp] 164 / 8e-41 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007800 [exp] 1367 / 0 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 1346 / 0 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 536 / 2e-174 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 534 / 1e-173 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 261 / 8e-73 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253200 [exp] 228 / 6e-69 AT5G43822 171 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G102000 [exp] 243 / 1e-66 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 226 / 6e-61 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 201 / 9e-53 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G079200 [exp] 189 / 5e-49 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10013216 pacid=23166592 polypeptide=Lus10013216 locus=Lus10013216.g ID=Lus10013216.BGIv1.0 annot-version=v1.0 ATGGAGGGTATGGTGAAGAAGTATCAGCAGCGGTACAGAAAAGCTAGAGATGAAATGGAGAAATGGGAAGCTCTTCAATCTCGCTTTCTTTCTCAATTTC GGAATGCTTCTGCCATCATCAGAAGATTACCAGTGATTAAAAGCTCAACCAATTTCGGAACTTTGAATGGCATCGCTGGATATAAAGATGAAGTGTTGAG AAACCAGGAAGAGTTTCGTCTGATTGTATTGTCTCTAGAGAAGATGCATCGTGATGGTAAACAGTTAGTAAACCAGGGCTCTGCCAATAGTAAAAAAAAA TTGCGGCAAAGGATTGGCGTTAAACCGTGTCTGGAAGATTGCTTGGATGGCCTCATGCGTCTCCATGATATGCATCAATCCGAGTACCTTCTCAAGTCAT CAGTGGTTTCTGCACTTTCACCACTTAGCATGAAACCAAGCTCCAGTGATCTAAATGGCCTCCACCAGCTCTTGGTTGATGAGCCTAACATCCCCAAAGA AGAAGGGATTTGCCAATTCTGGAGTGGATCTATGGCTGATAGTTCCAATAGTTGGGATGGAAGTTATGACCCAGGCAGTCAATCAGAGGAGAGTTACCAT TTCGAGAGGCTACACATAGAGCCTATTTACGATTCCTTCATTTGCCCTTTGACCAAGCAAATCATGAAGGATCCAGTCACCTTGGAGAACGGCCAGACTT TTGAGCGTGAAGCGATTGAAAGATGGTTCAAGGAATGCAGGGAAAGTGGGAGGAAGTTAGTTTGCCCTTTGACTCAGAAGGAACTCAAGAGCATAGAGTT GAACCCTAGTTTAGCCCTGAGGAACACCATTGAAGAGTGGACAGCTAGGAACGATTCAGTCCAGCTCGATATAGCGCGGAGGTCACTCAATTTGAGCAGT CCCGAGAGTGAAATTCTCCAGTCTTTACAGTATGTCCAGTACATCTGTCAGAACAATCGCTCGAACAAGCATGTAGTGCGTAACAACGAGTTGATCCCGA TGATTGTCGATATGTTGAAGAGTAGCAGTCGGAGAGCTCGCTGTAGAGCTCTGCAAACTCTGCGGATCGTGGTCGAGGATGACGATGATAATAAGGCAAT ATTGGGTGAGGGTGACACAGTCCGATCAATCGTTAAGTTCTTGTCGCACGAACAATCGAAAGAGAGGGAGGAAGCTGTTTCGTTACTGTACGAGCTTTCG AAATCTATGGCATTGTGTGAGAAGATCGGTTCGGTCAACGGGGCGATTCTTATATTAGTCGGAATGACAAGCAGCAAATCAGAGCATCTCGCTACTGTCG AAAAGGCTGACCGGATTCTCGAAAATCTGGCGCAGTGTGAAAACAATGTGCGCGAGATGGCTGTGAATGGCAGACTGCAGCCTCTTCTGGATCACATTCT TGAAGGTCCGCATGAAACGAAGCTTTCGATGGCTTCTTATCTCGGCGAACTAGTTCTGAACAACGACGTCCAAGTTCTCGTGGCGAAAACCGTCGGCTCA TCGCTAATAAGCATTATGAGAAGTGGCAATCCACAGTCAAGAGAAGCTTCTTTGAAAGCTTTGAACCAGATTTCGCATTTCGAGGGAAGCGCCAAGATTC TGATCGAGGAAGGAATCCTTCCTCCCCTCGTCAAGGATCTCTTCACCGTCGGCGCCAACACACTACCGATGCGTCTTAAGGAAGTCGCTGCGACGATTCT CGCCAATGTGGTGAATTCAGGGTACGAATTTGATGCCATTTCCGTCGGATCTTATCATCACACACTGGTCTCGGAAGAAATCGTACATAACCTACTCCAT TTGATCAGCAACACCGGTCCAGCTATCGAATGCAAGCTTCTCCAGGTTCTGGTCGGACTAACCGGTTCGCAAGCTACTGTTTCAAACGTTGTAGCCGCGA TTAAAAGCTCCGGAGCTATCATCAGTTTGGTTCAGTTCATCGAGGCTCCGCAGCAGGATTTACGATTAGCTTCGATCAAGCTTCTCCAGAATTTATCGCC ACATATCGGTCAGGAGCTAGCCGATGCTCTTCGTGGCACGGCAGGACAGCTAGGCAGTCTAATCCAAGTCGTATCTGAAAACTTGGGGATTTCGGAAGAG CAAGCGACTGCCATCAGTCTTCTGGCCAAACTCCCCGAGCAAGATTTGGGACTCACGAGACAGATGCTCGACGAAGGAGCGTTCGAACTGATTTACACTC GAGTGGTGAGGATTCGTCAAGGTGAGATTAGAGGGACTCGTTTCGTGACACCGTTTTTAGAAGGACTCGTGCGAGTCCTCGCAAGAATTACGTTCGTTCT GGGAGAAGAGCCTGATTCGGTTGCGTTCTGTCGCGATCACAACCTCGCTGGGTTGTTCATCGAGCTGTTACAGTCGAATGGACTCGACAATGTACAGATG AGTTCGGCAATGGCATTGGAGAATCTCTCCCAGGAGACGAAGAACTTAACGAGACTGCCCGACTTGCCTTCTCCAAAATTCTGTTCGTCGATTTTCCCAT GCTTTAGCAGGCAGCCTGTGATAACGGGACTGTGCAGGCTGCATCGTGGAACGTGTTCGTTGAACGAGACGTTCTGTCTTCTCGAAGGGCAAGGAGTCGA GAAGCTAGTGGCGCTTCTCGACCATAATAACGAGATGGTGGTCGAGGCGGCGCTTGCTGCTGTGTGTACACTGTTGGAGGATGGTGTGGACGTTGAGCAA GGGATGAGAGTGTTGTACGATGCGGAAGGAATCAGACCAATTCTCGATGTATTGATCGAGAGACGAACCGAGAATCTGAGGAGGAGGGCTGTGTGGGCAG TGGAGAGGCTTCTGCGGTTTGATGATATCGCGAATGAAGTTTCTGGGGATCCTAATGTGAGTACTGCTCTTGTTGATGCCTTCCAGCATGCGGATTACCG GACTCGACAGATCGCGGAGCGTGCTCTGAGGCATGTAGATAGGATACCGAACTTCTCTGGGGTGTTTCCGAACTTAGGCGGGTGA
AA sequence Show only first row Show all	>Lus10013216 pacid=23166592 polypeptide=Lus10013216 locus=Lus10013216.g ID=Lus10013216.BGIv1.0 annot-version=v1.0 MEGMVKKYQQRYRKARDEMEKWEALQSRFLSQFRNASAIIRRLPVIKSSTNFGTLNGIAGYKDEVLRNQEEFRLIVLSLEKMHRDGKQLVNQGSANSKKK LRQRIGVKPCLEDCLDGLMRLHDMHQSEYLLKSSVVSALSPLSMKPSSSDLNGLHQLLVDEPNIPKEEGICQFWSGSMADSSNSWDGSYDPGSQSEESYH FERLHIEPIYDSFICPLTKQIMKDPVTLENGQTFEREAIERWFKECRESGRKLVCPLTQKELKSIELNPSLALRNTIEEWTARNDSVQLDIARRSLNLSS PESEILQSLQYVQYICQNNRSNKHVVRNNELIPMIVDMLKSSSRRARCRALQTLRIVVEDDDDNKAILGEGDTVRSIVKFLSHEQSKEREEAVSLLYELS KSMALCEKIGSVNGAILILVGMTSSKSEHLATVEKADRILENLAQCENNVREMAVNGRLQPLLDHILEGPHETKLSMASYLGELVLNNDVQVLVAKTVGS SLISIMRSGNPQSREASLKALNQISHFEGSAKILIEEGILPPLVKDLFTVGANTLPMRLKEVAATILANVVNSGYEFDAISVGSYHHTLVSEEIVHNLLH LISNTGPAIECKLLQVLVGLTGSQATVSNVVAAIKSSGAIISLVQFIEAPQQDLRLASIKLLQNLSPHIGQELADALRGTAGQLGSLIQVVSENLGISEE QATAISLLAKLPEQDLGLTRQMLDEGAFELIYTRVVRIRQGEIRGTRFVTPFLEGLVRVLARITFVLGEEPDSVAFCRDHNLAGLFIELLQSNGLDNVQM SSAMALENLSQETKNLTRLPDLPSPKFCSSIFPCFSRQPVITGLCRLHRGTCSLNETFCLLEGQGVEKLVALLDHNNEMVVEAALAAVCTLLEDGVDVEQ GMRVLYDAEGIRPILDVLIERRTENLRRRAVWAVERLLRFDDIANEVSGDPNVSTALVDAFQHADYRTRQIAERALRHVDRIPNFSGVFPNLGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	3.6	0.8390
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	5.2	0.8196
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	5.7	0.8315
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	6.9	0.8189
AT5G02620		ATANK1, ANK1	ankyrin-like1 (.1)		Lus10025288 [exp]	7.7	0.8009
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	13.1	0.8022
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	15.3	0.8134
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	17.1	0.8116
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10038236 [exp]	18.3	0.8107
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	18.7	0.7975

Compare expression of checked genes

Lus10013216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.