Plant FIBer expression Database

Lus10013217 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20770 114 / 1e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030736
[exp]
311 / 3e-107 AT1G20770 147 / 2e-43 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G253101
[exp]
142 / 2e-41 AT1G20770 160 / 1e-49 unknown protein
PFAM info
Representative CDS sequence
>Lus10013217 pacid=23166615 polypeptide=Lus10013217 locus=Lus10013217.g ID=Lus10013217.BGIv1.0 annot-version=v1.0
ATGGCAGAAGCGGAGGGCACGACTGAAATTAAGATGGAAGGGAGAACCGTTGAGAGCAAACAGATTCAACAGGGCCAACATATAGAAGGAGAAGAAGAAC
GGAATCAAGCTGTTTTGAGACTTCTGGATTCGATGGATGGCTACTTAACCCTCTACGATTCTCTATCTTCTACACTTCGTCAGGGATGGTTTGACTTAGC
GAGTGCCCGGCATTCCATGGGGACTTCACGCATCAGCTATGCTATGCTGGATCTTAAAGAGCATGCCGCTTCTACTTCACTCAAGATAATCTCAGATGGC
GATGATGAGGATTCATCAGGGAAGCAACCGCGCTTCCAGTTGCGAAAATGGGGATCTTTGGATCAGGAGAGTTTCTGTCTTGACGATCCGTCGAAAGAGC
ATAAGGAATCGGGTGGCACTTTGAAGCAAAGAAATCGTGTCGGTTCTCAGCTCCAGGACGAAACGAAGTCCGATAATGGAGCTCAGCTTGACGTTGATGA
CAGGATAAAGAATGAGCGATCCAAATCCTTAGCCGTGTTTGGAACTATGGTTTCTCCAAAGCTTCGAGCTTCCCAACTGTCATTTGAGAAAGGTACTAGT
TTTCTTTTTCAGTATCTCGACTGGCCTAATTTTACTCACCAGATCAAGCTAGAGAATCCCGCTATCACTGCATCTCAACTGTTGATTGTTGTTTATGCAG
CAATCGAGACAATCGTCGAACTGGCCAATCTTCGTTCGGAGATCCTTGCCGCGGGAAATCAAGTCCACAGACATTCAGAAGTTGCCAAGACACAGATTGA
TTAA
AA sequence
>Lus10013217 pacid=23166615 polypeptide=Lus10013217 locus=Lus10013217.g ID=Lus10013217.BGIv1.0 annot-version=v1.0
MAEAEGTTEIKMEGRTVESKQIQQGQHIEGEEERNQAVLRLLDSMDGYLTLYDSLSSTLRQGWFDLASARHSMGTSRISYAMLDLKEHAASTSLKIISDG
DDEDSSGKQPRFQLRKWGSLDQESFCLDDPSKEHKESGGTLKQRNRVGSQLQDETKSDNGAQLDVDDRIKNERSKSLAVFGTMVSPKLRASQLSFEKGTS
FLFQYLDWPNFTHQIKLENPAITASQLLIVVYAAIETIVELANLRSEILAAGNQVHRHSEVAKTQID

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G20770 unknown protein Lus10013217
[exp]
0 1
AT5G15220 Ribosomal protein L27 family p... Lus10007170
[exp]
1.0 0.9408
AT5G44200 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) Lus10017682
[exp]
1.4 0.9359
AT4G27750 ISI1 IMPAIRED SUCROSE INDUCTION 1, ... Lus10017985
[exp]
3.3 0.8916
AT4G17486 PPPDE putative thiol peptidase... Lus10033030
[exp]
4.0 0.9052
AT4G08690 Sec14p-like phosphatidylinosit... Lus10033464
[exp]
4.2 0.9073
AT4G28830 S-adenosyl-L-methionine-depend... Lus10043228
[exp]
4.5 0.9156
AT2G16860 GCIP-interacting family protei... Lus10027464
[exp]
4.6 0.9162
AT4G22000 unknown protein Lus10008487
[exp]
7.4 0.9136
AT4G17190 FPS2 farnesyl diphosphate synthase ... Lus10022545
[exp]
8.9 0.8862
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10032634
[exp]
9.9 0.9054

Lus10013217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.