Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 553 / 0 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 552 / 0 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G09400 467 / 4e-166 FMN-linked oxidoreductases superfamily protein (.1) AT2G06050 401 / 3e-139 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) AT1G18020 372 / 2e-129 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 372 / 2e-129 FMN-linked oxidoreductases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001276 [exp] 527 / 0 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 522 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001274 [exp] 496 / 4e-177 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 491 / 1e-174 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10028663 [exp] 394 / 4e-136 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 385 / 8e-133 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10030737 [exp] 348 / 6e-120 AT1G76680 258 / 1e-84 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102700 [exp] 576 / 0 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 541 / 0 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.003G004600 [exp] 539 / 0 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.013G102750 [exp] 526 / 0 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102800 [exp] 525 / 0 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 524 / 0 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102900 [exp] 519 / 0 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.006G142800 [exp] 389 / 2e-134 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 389 / 2e-134 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 387 / 9e-134 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10013218 pacid=23166632 polypeptide=Lus10013218 locus=Lus10013218.g ID=Lus10013218.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGCTCAGCCTCTCCTGACTCCTTATAAAATGGGCAACTTCAGTCTCTCTCACAGGGTAGTTTTGGCACCTCTGACCAGGATGAGATCGT ACGGGAACATCCCTCAGCCACACGCCGTCTTGTACTACTCCCAAAGAACATCTCCTGGTGGTCTTTTGATTGCTGAAGCCACCGCCATTTCCGATACTTC CATCGGTTACCCAAATGTTCCTGGAATCTGGACTGAAGAGCAAATCCAAGGATGGAAACCAATTGTGAATGCTGTGCATGAGAAAGGAGGCATCTTCTTT TGCCAGATTTGGCATTCTGGGAGAGTCTCTGACTACTGCTTCCAACCAAATGGACAACCTCCCGTCTCCTGTACTGATAAGCCGATTACAGCTCAGTTCC AGATAGATGGCAGCGAAGCTCCTGCATATCCTGCTCCCCGTAGACTCGAAACCGAGGAGATTCCTCGCATTGTAAACGACTTTGCAGTCGCAGCAAGGAA TGCCATGGAAGCTGGTTTTGATGGCGTGGAGATCCACGGAGCCAACGGATACATCGTTGATCAATTCCTCAAGGATCAGGTGAACGACAGGACTGACAGA TACGGAGGAACCTTGGAAAACCGGTGCAGGTTCGCAGTGGAAGTGGTCAAAGCAGTTGCGGACGAGATTGGAGCAGACCGAGTTGGACTCAGGCTGTCCC CATTTGCAGATTATAACGACTGTAAAGATTCGAACCCAGGAGCACTAGGCCTTTACATGGCTCGAGTGCTGAACAAGCTCGGGATTCTGTTCTGCCACGT GATTGAGCCACGGATGATCAATCAGTTTGATGCGGTGGAGACCGAGCACAGCTTGTTGCCCATGAGGAAGGCCTTTGGAGGTACGTTCATGGTTGCTGGA GGATACACTCAACGCAACGGTAACCAAGTGGTTGCAGATGGAGGTGCGGATTTAGTTGCGTTCGGGCGTTGGTTCTTGGCTAATCCAGACTTGCCCAAGA GATTCGAGCTGAATGCAGAGCTGAATAAGTATGACAGAAGCACCTTCTATACTTATGACCCAGTTGTTGGTTACTCCGACTACCCATTTCTCGAAGCCAC GGCCGAGTAA
AA sequence Show only first row Show all	>Lus10013218 pacid=23166632 polypeptide=Lus10013218 locus=Lus10013218.g ID=Lus10013218.BGIv1.0 annot-version=v1.0 MAESAQPLLTPYKMGNFSLSHRVVLAPLTRMRSYGNIPQPHAVLYYSQRTSPGGLLIAEATAISDTSIGYPNVPGIWTEEQIQGWKPIVNAVHEKGGIFF CQIWHSGRVSDYCFQPNGQPPVSCTDKPITAQFQIDGSEAPAYPAPRRLETEEIPRIVNDFAVAARNAMEAGFDGVEIHGANGYIVDQFLKDQVNDRTDR YGGTLENRCRFAVEVVKAVADEIGADRVGLRLSPFADYNDCKDSNPGALGLYMARVLNKLGILFCHVIEPRMINQFDAVETEHSLLPMRKAFGGTFMVAG GYTQRNGNQVVADGGADLVAFGRWFLANPDLPKRFELNAELNKYDRSTFYTYDPVVGYSDYPFLEATAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	0	1
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	2.0	0.9533
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	2.6	0.9545
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	4.0	0.9515
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	4.5	0.9321
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	4.5	0.9405
AT3G14470			NB-ARC domain-containing disea...		Lus10028279 [exp]	4.9	0.9293
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	5.2	0.9523
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	5.5	0.9465
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	7.2	0.9383
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	9.9	0.9438

Compare expression of checked genes

Lus10013218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.