Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 119 / 3e-35 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 118 / 3e-35 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT3G51880 87 / 4e-22 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT2G17560 84 / 2e-21 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 67 / 3e-15 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT5G23420 49 / 1e-07 HMGB6 high-mobility group box 6 (.1.2) AT4G11080 41 / 9e-05 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 41 / 9e-05 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT2G34450 39 / 0.0003 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030738 [exp] 155 / 4e-49 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 148 / 4e-44 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10012252 [exp] 125 / 4e-38 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 125 / 9e-38 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016695 [exp] 104 / 5e-29 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035991 [exp] 102 / 6e-29 AT1G20693 117 / 8e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10027787 [exp] 84 / 3e-21 AT3G51880 132 / 2e-39 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 77 / 4e-18 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 76 / 5e-18 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252600 [exp] 129 / 2e-39 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 107 / 7e-31 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 107 / 1e-30 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 79 / 4e-19 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 67 / 8e-15 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 54 / 2e-09 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10013219 pacid=23166588 polypeptide=Lus10013219 locus=Lus10013219.g ID=Lus10013219.BGIv1.0 annot-version=v1.0 ATGAAAGGAGGTAATTCAAAGTCTGATGCGAAGAATTCCAAGCTCTCTGTGACTAAGAAGCCTACTAAGGTGACGCAAAAAGCGGGTAAAGCAGCCAAGG ACCCGAACAAGCCAAAGAGGCCTCCTAGCGCCTTCTTCGTCTTCATGGAGGACTTCAGGGTGCAGTTTAAGAAGGACCATCCCAAGAACAAATCAGTTGC TGCTGAAAAGCAACCCTACATCGCCACAGCTGAGAAGAGGAAAGTGGAGTATGAGAAGAAGATGAATGCCTACAATAAGGAACAGGCTGAGGGCCCCAAG GAGGAAGAGGAGTCCGAGAAGTCCATGTCCGAGGTACACGATGAGGATGACGATGAAGATGGTAGTGACGAGGAGGATGATGATGACGAGTAA
AA sequence Show only first row Show all	>Lus10013219 pacid=23166588 polypeptide=Lus10013219 locus=Lus10013219.g ID=Lus10013219.BGIv1.0 annot-version=v1.0 MKGGNSKSDAKNSKLSVTKKPTKVTQKAGKAAKDPNKPKRPPSAFFVFMEDFRVQFKKDHPKNKSVAAEKQPYIATAEKRKVEYEKKMNAYNKEQAEGPK EEEESEKSMSEVHDEDDDEDGSDEEDDDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	0	1
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	2.2	0.9234
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	2.8	0.8870
AT3G02250			O-fucosyltransferase family pr...		Lus10036833 [exp]	4.9	0.8733
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	5.7	0.8820
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	6.5	0.8760
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	7.0	0.8364
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	7.1	0.8611
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	7.7	0.8792
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	9.5	0.8685
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	10.6	0.8546

Compare expression of checked genes

Lus10013219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.