Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37420 460 / 3e-156 Domain of unknown function (DUF23) (.1) AT1G27200 320 / 6e-102 Domain of unknown function (DUF23) (.1) AT5G40720 295 / 3e-92 Domain of unknown function (DUF23) (.1) AT3G27330 294 / 8e-89 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016022 [exp] 622 / 0 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 585 / 0 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 565 / 0 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 319 / 2e-101 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 316 / 1e-100 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 297 / 5e-93 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014568 [exp] 293 / 1e-91 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013291 [exp] 289 / 8e-90 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10030815 [exp] 289 / 9e-90 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252100 [exp] 565 / 0 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 302 / 7e-95 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 289 / 9e-90 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 282 / 2e-87 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10013221 pacid=23166598 polypeptide=Lus10013221 locus=Lus10013221.g ID=Lus10013221.BGIv1.0 annot-version=v1.0 ATGAAGTATCCTCCTCCTTCTCTTCTCCCTATTCTCCTCCATCCCGCCGCCGTCAGACCATTCCCCCTCCTCCAAACGACGCGTCGTCTCGCCTCCGCTC TCCTCCTTTCCATCATCATCTTCCTCTCCGTTTCAATCTTCCTCTCACTTTCACCCTTCTCTTCCTCTCTCCTTCAATCCTTCTACGGCGGCTGCAATTC TACCACCGCCGCCGCCGCCGTCGAATTCCACATCGACTCTGTTTCCGTTCTGCTCCCGGACTGGGAGGTTCTCGTGATTGTGTCACAACAGGACACTCAA TTGTTGCCGCCGGCGGAGTCGATTCAATCACGGGAAGAAGAAGTAGAAGAAGCATTCATCTGCGTTTATCCCGAAGAGGAGACTTCCCCGGCGAGATTCG CCGGTGTTCTGCCGTCGAGGGGTCAGCTTGTATTCAAGTGTTTGCTGCCGGAGAGGCTCCGCCAGATGAAGGAATTGAGATCATCCCCTGTACTGGTCAG GAGATCGTCGGAGGAACTGTATGGATTTTCCTTTCCGGAGAAATCGCTGCTGAGGTGGACATTCCTCGCGTACGAATCTTTCTCCACCGAGAATGACGTC GTGCTGTTCGCCAAAGGCGTCAACAGTAAGCAAGCATTCAACCGACCTCCTCATGAGCTGAGGTGCGTGTTCAGCAATCCTGATGACGACGATGATTCCG CCATGACAATCACCACCGTTGTCACGAGCTCCGATCAGGAGGTTTTCCGGTGCGGCCATCCGGATTTGACTGGCTTCGGTGGCTCAAACACAACGAGAGT CAAAATCTCTCTGGAGATAACCAACAGCGGTGGAACGACTGTTTTAGTTCCTTCGGTAGCGTACTACTCTCCGTGGCGCAACAGGATAGAGATTCCGCGG CGGAAGCATCAAATCTGTGCCGCGACGATGGTGTACAACTCCGCAAAGTTCCTGCGGGAGTGGGTGGTTTACCACTCCGGAATCGGCGTCGATAAATTCT TCCTCTACGACAACGACAGCGACGACAACCTACAATCCGTCGTCGGATCGTTGAATTCAGAAGGATATCAGATCGAAACGGTGTCGTGGATTTGGCCGAA GACTCAGGAAGCCGGATTCTCTCACTCCGCGGTGTACGCTAAGGAATCGTGCTATTGGATGATGTACGTCGACGTGGACGAGTTCGTATTCTCGCCGCGG TGGAGCTCCGCCGCTGAGCCCTCGAATCGGATGTTGAAATCCCTACTTTCAGCGAATTCGAGCAGCGAAAAAGTGGGGCAGGTCTCGATCCGGTGCAACG AGTTCGGGCCGTCGGGTCGGAAGACTAACCCGGAGGAAGGGGTGATGCAAGGGTACGATTGCAGGAGGAGATTGGACACTCGGCACAAATCGATTGTTCT GCTAGAGGCAATCGATGATTCGCTGCAGAACGCAGTGCATCACTTCAGGCTGAGAGGGGGCGGGGGGGAGTACGTGTCGAAGCAGGTGAACCTGGCGACG GCGGTGGTGAATCACTACAAGTACCAGGCGTGGTCGGAGTTCAAGTTGAAGTTTCGGAGGAGAGTGTCGACGTACGTGGTGGATTGGAAGACGGCGGTGA ATATGGGGTCGAAGGACAGGGCGCCGGGGTTGGGGGCCACGGCGGTGAAGCCGGAGGATTGGGAGCGGCGGTTCTGTGAGATGAAGGACGATCGGTTGAA GGATGTGGCGCGGAGATGGTTTGGCGGCGGAAAGTACAGATTGGCGTCCGCATAG
AA sequence Show only first row Show all	>Lus10013221 pacid=23166598 polypeptide=Lus10013221 locus=Lus10013221.g ID=Lus10013221.BGIv1.0 annot-version=v1.0 MKYPPPSLLPILLHPAAVRPFPLLQTTRRLASALLLSIIIFLSVSIFLSLSPFSSSLLQSFYGGCNSTTAAAAVEFHIDSVSVLLPDWEVLVIVSQQDTQ LLPPAESIQSREEEVEEAFICVYPEEETSPARFAGVLPSRGQLVFKCLLPERLRQMKELRSSPVLVRRSSEELYGFSFPEKSLLRWTFLAYESFSTENDV VLFAKGVNSKQAFNRPPHELRCVFSNPDDDDDSAMTITTVVTSSDQEVFRCGHPDLTGFGGSNTTRVKISLEITNSGGTTVLVPSVAYYSPWRNRIEIPR RKHQICAATMVYNSAKFLREWVVYHSGIGVDKFFLYDNDSDDNLQSVVGSLNSEGYQIETVSWIWPKTQEAGFSHSAVYAKESCYWMMYVDVDEFVFSPR WSSAAEPSNRMLKSLLSANSSSEKVGQVSIRCNEFGPSGRKTNPEEGVMQGYDCRRRLDTRHKSIVLLEAIDDSLQNAVHHFRLRGGGGEYVSKQVNLAT AVVNHYKYQAWSEFKLKFRRRVSTYVVDWKTAVNMGSKDRAPGLGATAVKPEDWERRFCEMKDDRLKDVARRWFGGGKYRLASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37420			Domain of unknown function (DU...		Lus10013221 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	3.9	0.9405
AT2G18210			unknown protein		Lus10041771 [exp]	6.6	0.9373
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031307 [exp]	15.9	0.8937
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	21.2	0.8803
AT2G02370			SNARE associated Golgi protein...		Lus10007583 [exp]	24.4	0.9293
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	24.8	0.9303
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	24.9	0.9097
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	32.3	0.9204
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	34.1	0.9191
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	36.4	0.9230

Compare expression of checked genes

Lus10013221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.