Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20650 321 / 9e-110 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 311 / 6e-106 Protein kinase superfamily protein (.1) AT5G18610 285 / 1e-93 Protein kinase superfamily protein (.1.2) AT5G13160 274 / 2e-90 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 271 / 2e-90 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G07070 266 / 7e-88 Protein kinase superfamily protein (.1) AT3G24790 263 / 2e-87 Protein kinase superfamily protein (.1) AT3G26940 251 / 1e-81 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT4G13190 245 / 7e-80 Protein kinase superfamily protein (.1) AT1G07870 244 / 4e-79 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030741 [exp] 463 / 1e-165 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10016021 [exp] 360 / 9e-125 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012249 [exp] 328 / 3e-103 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10015756 [exp] 282 / 2e-93 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 283 / 4e-93 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 283 / 5e-93 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 270 / 2e-89 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 261 / 7e-86 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 261 / 7e-86 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009300 [exp] 350 / 3e-121 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 333 / 3e-114 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 278 / 4e-93 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 283 / 5e-93 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 281 / 8e-93 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 277 / 2e-92 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 278 / 5e-91 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 271 / 4e-89 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 267 / 3e-88 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 266 / 1e-87 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013222 pacid=23166662 polypeptide=Lus10013222 locus=Lus10013222.g ID=Lus10013222.BGIv1.0 annot-version=v1.0 ATGAACTGCTTCTCTTGCATTAATACTCGCCGCAAGGGAGTCAAGATCGACATTGAGAATGTTCCTGGCTCTTCCAACCACCGGAATTCTGCCACCGATT CATCTGTTTCTTGGGGGGTTTTGGGGGCAGTTAGCGGGAAGGGGAAGTGTTCGGAAGTTAAGCCGGCGAAATGCCAAGGCGCTTGCAGTTTCTCGTTCTT GGAGCTGGCGAATGCTACTCAGAATTTCAGGGATGCGAATCTGATTGGAGAAGGGGGTTTTGGTAAGGTTTACAGAGGCCGGCTCCAAACAGGCCAGATT GTTGCGGTGAAACATCTGAATCAGGAAGGAATGCAGGGATATCAGGAGTTCATCGTTGAGGTTCTAATGTTGAGCCTCTTGCATCATCCGAATCTAGTTA CTTTGACTGGCTACTGCACTGCCGGCGATCAGAGAATGCTGGTTTATGAGTACATGCCAATGGGAAGCTTGGAAAATCATCTCTATGATGTGGATCCTGA TAAGGAGCCACTTGGTTGGAGCACGCGAATGAAGATCGCCGTTGAATCAGCTAGAGGGCTCGAGTACCTGCATTGCAAAACAAGTCCGCCTATTATCTAC CGTGACCTAAAATCAGCAAACATCTTGCTGGACGATGATTTCCACGCCAAGCTATCTGATTTCGGACTTGCCAAACTGGGACCTGTCGGCGAGAACACGC ATGTTTCGACTAGAGTTATGGGACGTACGGCTACTGCGCTCCGGAGTATGCCATGA
AA sequence Show only first row Show all	>Lus10013222 pacid=23166662 polypeptide=Lus10013222 locus=Lus10013222.g ID=Lus10013222.BGIv1.0 annot-version=v1.0 MNCFSCINTRRKGVKIDIENVPGSSNHRNSATDSSVSWGVLGAVSGKGKCSEVKPAKCQGACSFSFLELANATQNFRDANLIGEGGFGKVYRGRLQTGQI VAVKHLNQEGMQGYQEFIVEVLMLSLLHHPNLVTLTGYCTAGDQRMLVYEYMPMGSLENHLYDVDPDKEPLGWSTRMKIAVESARGLEYLHCKTSPPIIY RDLKSANILLDDDFHAKLSDFGLAKLGPVGENTHVSTRVMGRTATALRSMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	0	1
AT5G06430			Thioredoxin superfamily protei...		Lus10032763 [exp]	1.7	0.8109
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	9.5	0.8499
AT3G21880	CO	COL12	B-box type zinc finger protein...		Lus10031584 [exp]	11.0	0.8234
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	18.3	0.7980
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	19.4	0.7974
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10030017 [exp]	33.6	0.8066
AT5G06270			unknown protein		Lus10004209 [exp]	40.0	0.7838
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	47.4	0.7866
AT5G28750			Bacterial sec-independent tran...		Lus10015910 [exp]	49.6	0.7744
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	49.8	0.7780

Compare expression of checked genes

Lus10013222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.