Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 378 / 4e-130 Protein kinase superfamily protein (.1) AT2G17220 356 / 2e-122 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G07570 330 / 3e-112 APK1A Protein kinase superfamily protein (.1.2.3) AT4G35600 325 / 4e-110 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT2G28930 324 / 1e-109 APK1B protein kinase 1B (.1.2.3) AT5G02290 319 / 4e-108 NAK Protein kinase superfamily protein (.1.2) AT5G01020 312 / 3e-105 Protein kinase superfamily protein (.1) AT5G15080 313 / 1e-104 Protein kinase superfamily protein (.1) AT1G14370 309 / 8e-104 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G02800 307 / 7e-103 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030743 [exp] 551 / 0 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10016020 [exp] 431 / 8e-152 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10012256 [exp] 429 / 7e-151 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10024512 [exp] 355 / 2e-121 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 349 / 2e-119 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 345 / 1e-117 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 341 / 3e-116 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 328 / 2e-111 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 327 / 5e-111 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 411 / 1e-143 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 387 / 2e-133 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.005G100900 [exp] 362 / 3e-124 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.007G062700 [exp] 356 / 4e-122 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 345 / 1e-117 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 340 / 9e-116 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G094300 [exp] 323 / 1e-109 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.017G077300 [exp] 323 / 2e-108 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 323 / 2e-108 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 320 / 2e-108 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013223 pacid=23166687 polypeptide=Lus10013223 locus=Lus10013223.g ID=Lus10013223.BGIv1.0 annot-version=v1.0 ATGCCCGTCGCCGTGAAGCGCGCTAATCAGGACAGCTCTCAAGGCCTCGAAGAGTGGCAGGCGGAAGTGAAGTTTCTTGGCAAATTCGGACACCAAAATC TAGTGAAATTGTTGGGTTACTGTGCAGAAGACAACCAATTCCTGCTGGTCTACGAATACATGCCCAAAGGCAGCTTGGAAAGCCACCTTTTCAGAAAGGG TACAGAGCCATTGTCGTGGGAGATTCGGATGAGAATCGCAATCGGTGCGGCCAAAGGCTTGGCGTTCCTCCACTCCTCCGAAAAAAGTGTCATCTATCGC GACTTCAAGGCTTCCAATATTCTTCTCGACCGGGACTTTAATGCCAAGCTTTCGGACTTCGGACTGGCCAAATTCGGCCCGATAAACGGCCAGTCCCACG TCACCACTCGAGTCATGGGCACCCACGGATACGCGGCGCCGGAGTACGTGGCGACCGGCCACCTGTACGTAAAGTCCGACGTATACGGATTCGGGGTGGT CCTACTCGAAATACTAACAGGCCTACGGGCCCTCGACACGAACCGGCCCAGCGGAGAGTACAGGCTAGTGGAATGGGCCAAGGCTTCCCTGTCCAGCAAG AGGAAGCTCAAGAAGATTATGGATCCGAGGCTTCAAGACCAGTATCCATTAAACGCTGCGTTGCAATCGGCGCAGCTTATACTCGAGTGCTTGGAGAACG ATCCGAAGATCAGGCCTTCCATGGAGGAAGTTTTGGAGACTTTGACCAAGATCAAAGAGATCCAGCATCATACCAAAGAGGTGAAATCTAGCAGCAGAGG TACTCACAGTCACAGCAGTGATGAAATTCATCATCAGCAGAGAAGCAACAGAAGTGGAAATGGGCATAGAACAAGGCATCATTCGAGTAGATAG
AA sequence Show only first row Show all	>Lus10013223 pacid=23166687 polypeptide=Lus10013223 locus=Lus10013223.g ID=Lus10013223.BGIv1.0 annot-version=v1.0 MPVAVKRANQDSSQGLEEWQAEVKFLGKFGHQNLVKLLGYCAEDNQFLLVYEYMPKGSLESHLFRKGTEPLSWEIRMRIAIGAAKGLAFLHSSEKSVIYR DFKASNILLDRDFNAKLSDFGLAKFGPINGQSHVTTRVMGTHGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGLRALDTNRPSGEYRLVEWAKASLSSK RKLKKIMDPRLQDQYPLNAALQSAQLILECLENDPKIRPSMEEVLETLTKIKEIQHHTKEVKSSSRGTHSHSSDEIHHQQRSNRSGNGHRTRHHSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	0	1
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	1.0	0.9408
AT2G32190			unknown protein		Lus10010460 [exp]	1.4	0.9383
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10014273 [exp]	2.4	0.9272
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	3.3	0.9113
					Lus10021100 [exp]	3.7	0.9148
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	4.0	0.9129
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	5.5	0.9164
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10029122 [exp]	7.5	0.8813
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	8.7	0.8746
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	9.7	0.8851

Compare expression of checked genes

Lus10013223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.