Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 575 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 401 / 1e-128 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 353 / 6e-111 NLP3 Plant regulator RWP-RK family protein (.1) AT1G64530 345 / 2e-107 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 346 / 2e-106 NLP7 NIN like protein 7 (.1) AT3G59580 333 / 3e-102 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 321 / 2e-97 NLP8 Plant regulator RWP-RK family protein (.1.2) AT2G17150 309 / 2e-95 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G35270 302 / 4e-90 NLP2 Plant regulator RWP-RK family protein (.1) AT5G66990 50 / 3e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030744 [exp] 1169 / 0 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 676 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 670 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 369 / 1e-116 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 364 / 1e-114 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 355 / 1e-111 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 342 / 4e-105 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 341 / 9e-105 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 316 / 2e-95 AT4G24020 953 / 0.0 NIN like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 429 / 2e-138 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 428 / 4e-138 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.017G018500 [exp] 345 / 7e-106 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166932 [exp] 338 / 2e-103 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 332 / 2e-101 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 326 / 2e-99 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 326 / 3e-99 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 315 / 5e-95 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 280 / 8e-82 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 272 / 4e-79 AT4G24020 991 / 0.0 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10013224 pacid=23166641 polypeptide=Lus10013224 locus=Lus10013224.g ID=Lus10013224.BGIv1.0 annot-version=v1.0 ATGGATGGCTCTTGGCAATCCGGTATGATGCTTGGTTCGAAGGCATCAGTCATGGACTCCGATTACATTGATGACTTTCTGCTAGATGGCTCCTGGCTAG AGGCGACGGATGTATCAGAGTTTCTCAATTACTCTCCATCTAATCATGATCTTGGTGCAACCTTAAACAATGTTGATACATCTACTGCTACTACTTCTCA AAGCAGCAATGAAGAAAAATCAAGCTCTGCAAGTTCAGTAAAGGACAGATTAGCTGGAGCAATCGGTTGCATTCGAGATTTGATCAACGATGAGGATGCC CTTGTACAAATATGGGTCCCCATGGAAGAAATGGGCAGGCAGGTTTTGACAACTAAAGATCAGCCCTTTGCACTTGATGGAGGTTTGGCGAACTATAGGG ACATATCTACAATCTATCAGTTTCCAGCTGAACAAGAGAGTGACTTCTCCAGTATGCCTGGTCGTGTTTTCTTGGCTCAAGTTCCTGAGTGGAGTCCTGA TGTTCAGTTGTTTACAAGCGACGAGTATCCACGAGTCGATCATGCTCGAAAGTATAACGTACGTGGAACTCTGGCTGTTCCTGTCTTTGAGCAGAACAGT GAAACTTGCTTAGGTGTAGTTGAGATTTTGACGAGTAGACGAGGAATCAAGTATCAGTCGGAGCTTGAGAAGGTCTCCAAAGCACTTGAGGCTGTTTATC TTAGGAGTTGTAGAACATCGATCTCTCGAAACATGAATGTAACTGCTGAAATGGCCTATAAAGCAGCATTGCCTGAAATCAAACAAGTCTTGAAAACTGC CTGCGAGACACATGAACTCCCCTTAGCTCAAACTTGGATCCCATGCACCATCCAACACCAAAACATTCAACATCATCCAGACTCCAACTGTCCCCATCAC TGTCTCTCAACCGTGGATGAAGCTTGCATCACACGCAACCCCAAGGTGAAAGGTTTCCACAAGGCCTGTTCAGAGCAACACTTGTTAAAGGGTCAAGGCG TTGCGGGAAAAGCATTGGCGACAAACGAGCCTTGCTTTTCTAACGATATAACTCGTTACAATAACGACGAGTACCCACTCTCGCGAGATGCGAGAGTGTT TGGATTGTGTGGTGCAGTTGCCATTCGACTGAGGAGTACTGTGATCGCTGGCGAAGTGGACTTTGTGCTCGAGTTCTTCTTGCCCGGAGAGTGTAGGACT CTTGATGAACAACATAGGATGCTTAATTCGTTGTCCATTGTGGTGGGAGATGCTTGCCGGACGTTGAGAGTTGTGACAGATGAAGAACTAGAGTGTGAGA AAGGTGTAGAATTTTGGGGCCAGAGGGGAAATGAGGAAGGATGGAAGTTGGGTAAATCAGTAGAGAGGAAACGGATAAAGGCAGATAGAAGGATCAGCTT GGAGGTTCTTAGGCAACACTTTTCTGGCACCTTGAAAGATGCTGCAATCAGTCTTGGTGTGTGCTCAACAACCCTGAAAAGAATATGCAGGCAACACGGA ATCACAAGGTGGCCATCTCGCAAACTGAAGAAGGTTGGTCACTCTCTGAAGAAGCTCCAAGTAGTAATGGACTCTGTTGAAGGCACCTCAGGCTCTCTGC ATATCAATTCCTTCTACACAACCTTCCCCAATCTCGATTCGAGTAATCCTCCCGACCCGCTATCATCAATCATCATCACACAGCCTGATCAGGATGCCTC GAAACCGAAACCAACTTCTTCTCCATCGTCCTGCAGTCAAAGCTCTGGCAGTTCAGCAGATCAGCTTCCTGTTCGTTCCCCTGCAGGGGAAGAAGAACAG GGCAATGTGGTGTCGAAGAACTCCTCAAATCGGGTTCAGAGAGTGAAAGTGGCGTACGGGGACGAGATAGTGAGGTTCCGGGTTTCGAGCAGCTGGGGAT ACGGAGACTTGTTGGTGGAGATTGGGAGGAGGTTTGGTATAGAAGAGATGAAGAAGTTTGATGTCAAGTATTTGGACGATGACTCGGAGTGGGTGCTGTT GACTTGTGATGAAGACATTGATGAATGTGTGGAAGTCTGCCATGCTTCAGTTAACCAAACTGTCAAGCTCTTGCTTCAGGTTTCCTCTCGTGGCAGTTCA GATTGA
AA sequence Show only first row Show all	>Lus10013224 pacid=23166641 polypeptide=Lus10013224 locus=Lus10013224.g ID=Lus10013224.BGIv1.0 annot-version=v1.0 MDGSWQSGMMLGSKASVMDSDYIDDFLLDGSWLEATDVSEFLNYSPSNHDLGATLNNVDTSTATTSQSSNEEKSSSASSVKDRLAGAIGCIRDLINDEDA LVQIWVPMEEMGRQVLTTKDQPFALDGGLANYRDISTIYQFPAEQESDFSSMPGRVFLAQVPEWSPDVQLFTSDEYPRVDHARKYNVRGTLAVPVFEQNS ETCLGVVEILTSRRGIKYQSELEKVSKALEAVYLRSCRTSISRNMNVTAEMAYKAALPEIKQVLKTACETHELPLAQTWIPCTIQHQNIQHHPDSNCPHH CLSTVDEACITRNPKVKGFHKACSEQHLLKGQGVAGKALATNEPCFSNDITRYNNDEYPLSRDARVFGLCGAVAIRLRSTVIAGEVDFVLEFFLPGECRT LDEQHRMLNSLSIVVGDACRTLRVVTDEELECEKGVEFWGQRGNEEGWKLGKSVERKRIKADRRISLEVLRQHFSGTLKDAAISLGVCSTTLKRICRQHG ITRWPSRKLKKVGHSLKKLQVVMDSVEGTSGSLHINSFYTTFPNLDSSNPPDPLSSIIITQPDQDASKPKPTSSPSSCSQSSGSSADQLPVRSPAGEEEQ GNVVSKNSSNRVQRVKVAYGDEIVRFRVSSSWGYGDLLVEIGRRFGIEEMKKFDVKYLDDDSEWVLLTCDEDIDECVEVCHASVNQTVKLLLQVSSRGSS D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10013224 [exp]	0	1
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	7.6	0.8271
					Lus10019504 [exp]	16.1	0.7780
					Lus10039759 [exp]	16.4	0.8161
					Lus10040066 [exp]	24.9	0.7964
					Lus10019410 [exp]	26.4	0.7966
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	30.2	0.7948
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	34.8	0.7069
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	38.2	0.7923
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10011633 [exp]	39.6	0.7814
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	42.1	0.7813

Compare expression of checked genes

Lus10013224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.