Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35090 942 / 0 CAT2 catalase 2 (.1.2) AT1G20630 917 / 0 CAT1 catalase 1 (.1) AT1G20620 834 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030745 [exp] 1025 / 0 AT4G35090 947 / 0.0 catalase 2 (.1.2) Lus10012258 [exp] 991 / 0 AT4G35090 945 / 0.0 catalase 2 (.1.2) Lus10016017 [exp] 852 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009800 [exp] 976 / 0 AT4G35090 960 / 0.0 catalase 2 (.1.2) Potri.005G251600 [exp] 967 / 0 AT4G35090 944 / 0.0 catalase 2 (.1.2) Potri.005G100400 [exp] 930 / 0 AT4G35090 958 / 0.0 catalase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06628 [flax] [poplar] Catalase-rel Catalase-related immune-responsive PF00199 [flax] [poplar] Catalase Catalase
Representative CDS sequence Show only first row Show all	>Lus10013225 pacid=23166674 polypeptide=Lus10013225 locus=Lus10013225.g ID=Lus10013225.BGIv1.0 annot-version=v1.0 ATGGATCCTTACAGGCATCGTCCTTCGAGCGCTTTCAATTCTCCTTTCTGGACTACCAATTCTGGAGCTCCAGTATGGAACAACAACTCTTCCATGACCG TCGGCCCTAGAGGTCCAATTCTGCTAGAGGATTATCATTTGGTGGAGAAACTGGCCAATTTTGATAGGGAACGTATTCCAGAGCGTGTTGTCCATGCTAG GGGAGCAAGTGCAAAGGGTTTCTTTGAAGTAACGCATGATATCTCTAGTCTCACCTGTGCTGATTTCCTCCGAGCTCCTGGTGTCCAGACACCTGTTATT GTTCGATTCTCTACCGTTATCCATGAACGTGGCAGTCCTGAAACTCTGAGAGATCCTAGGGGTTTTGCAGTGAAGTTCTACACTAGAGAGGGGAACTGGG ATCTTGTCGGTAACAATTTCCCAGTTTTCTTTGTCCGTGATGGAATGAAGTTCCCTGATATGGTACATGCCCTCAAGCCAAACCCAAAATCTCACATTCA GGAGAACTGGAGAATCCTCGATTTCTTCTCACATCACCCTGAAAGTTTGCACATGTTCTCCTTCCTCTTCGACGATCTAGGTGTTCCTCAAGATTACAGG CACATGGAGGGTTCAGGTGTTAACACCTATACATTGGTGAGCAAGTCTGGCAAAGCTCACCTTGTCAAGTTTCACTGGAAACCCACTTGTGGTGTCAAGT GTCTATTGGAGAATGAGGCAATTAAGGTTGGTGGAGCAAATCATAGCCATGCTACTCAAGATCTGTATGATTCAATTGCTGCTGGAAACTACCCAGAATG GAAGCTTTTCATCCAGACAATTGATCCAGATCACGAGGATAGATTTGATTTTGACCCACTTGACGTGACCAAGACCTGGCCTGAAGATATCATCCCTCTA CAGCCAGTTGGCCGCTTGGTCTTGAACAAGAACATTGATAACTTCTTTGCGGAAAACGAGCAGCTTGCTTTCTGCCCTGCAATCGTGGTTCCTGGTGTTT ATTATTCAGATGACAAGCTTCTTCAGACTCGCATCTTCTCCTATTCCGATACTCAGAGGCACCGACTTGGACCAAACTATTTGCAGCTCCCTGTTAATGC TCCCAAGTGTGCTCATCACAACAATCACCATGAAGGTTTCATGAACTTCATGCACAGGGATGAAGAGGTAAACTACTTCCCATCAAGGTACGATCCAGTT CGCAACTCTGAGCAATTCCCCATTCCTCCTCAAGTCTGCACTGGAAGGCGTGAGAAGTGTGTGATTTCCAAAGAGAACAACTTCAAGCAACCTGGGGAGA GATACCGCTCATGGGCATCTGACAGGCAAGAAAGATTCATCTGCCGTTGGATTGATGCCCTTTCCGATCCTCGTGTCACCCACGAAATCCGCAGCATCTG GATCTCATACTGGTCACAGGCTGACCAATCTCTCGGACAGAAGCTAGCAAGCCGTATGAACGTGAAGCCAAGCATTTGA
AA sequence Show only first row Show all	>Lus10013225 pacid=23166674 polypeptide=Lus10013225 locus=Lus10013225.g ID=Lus10013225.BGIv1.0 annot-version=v1.0 MDPYRHRPSSAFNSPFWTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISSLTCADFLRAPGVQTPVI VRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGVPQDYR HMEGSGVNTYTLVSKSGKAHLVKFHWKPTCGVKCLLENEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL QPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGVYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPV RNSEQFPIPPQVCTGRREKCVISKENNFKQPGERYRSWASDRQERFICRWIDALSDPRVTHEIRSIWISYWSQADQSLGQKLASRMNVKPSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	0	1
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	1.4	0.9238
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	3.3	0.9301
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	4.9	0.8891
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015418 [exp]	11.8	0.9067
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	13.3	0.8855
					Lus10037130 [exp]	15.7	0.8755
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	17.3	0.8610
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10014060 [exp]	20.3	0.8416
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	20.5	0.8871
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	22.3	0.8563

Compare expression of checked genes

Lus10013225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.