Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76310 452 / 8e-158 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 439 / 4e-153 CYCB2;3 Cyclin B2;3 (.1) AT2G17620 329 / 9e-110 CYCB2;1 Cyclin B2;1 (.1) AT4G35620 317 / 4e-105 CYCB2;2 Cyclin B2;2 (.1) AT5G06150 243 / 6e-76 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 238 / 2e-74 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT1G20590 229 / 6e-74 Cyclin family protein (.1) AT2G26760 213 / 4e-65 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 212 / 2e-64 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT1G16330 215 / 1e-63 CYCB3;1 cyclin b3;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030746 [exp] 675 / 0 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10016015 [exp] 547 / 0 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10012261 [exp] 428 / 1e-147 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10036080 [exp] 249 / 6e-79 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 240 / 5e-75 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 216 / 2e-65 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10003800 [exp] 203 / 1e-60 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10001765 [exp] 206 / 7e-59 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10008103 [exp] 188 / 1e-54 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010000 [exp] 511 / 0 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 489 / 1e-172 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 410 / 9e-142 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 407 / 2e-140 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.001G272000 [exp] 248 / 2e-78 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 242 / 4e-76 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.016G033000 [exp] 241 / 4e-75 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 238 / 5e-74 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.010G173200 [exp] 211 / 1e-61 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 192 / 1e-54 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013226 pacid=23166638 polypeptide=Lus10013226 locus=Lus10013226.g ID=Lus10013226.BGIv1.0 annot-version=v1.0 ATGGCCGGATCAGACGAGAATAACCCTGGTTCCATTCGAGCTTCCGCTGTAAGCGCTCAAGGCGGCGGTGTTGTACATGCCGGATTAGAGAAGCTTCCGG TGACTCGTCGAGCATTGAGTACCATCAACAGGAATATAACCGGAGCACCGATTCATCCATCTCATAAGCAAAGTGATAAGAACCCACTCGTTCTTCATCG TCCCATCACTAGAAGGTTTGCTGCACAATTAGCCAATAAGCAAGAGGAGGAACTCAAAGATGAAGAATCACAAGACTTTCCAATTGGTGATGCAGAAGAC TTCTCTACTCCAATGTTTGTGCAGCACACGGAAGCTATGCTGGAGGAGATTGACCGCATGGACGACGAAGTGGAAATGGAGGATGCCTCTGAAGAAGAGG AAGAAGACTCGGTTGTCGACATAGACAGTTGCGACGACAAGAACCCTCTCGCTGTGGTCGAATACATTGACGAGTTGTATGCATTCTACAGGAAAGCTGA GGTTTCCAGTGCTGTCCCATCAAACTACATGGAACAACAATTTGACATCAAAGAAAGGATGAGAGGCATTCTTATTGACTGGTTGATTGAGGTTCATGAC AAGTTTGAATTGATGGAAGAGACGCTTTACCTTACTGTGAATCTCATTGACAGATTCTTGGCAGTTGAATCAGTTGTGAGAAAGAAACTCCAGCTGGTTG GAATTACAGCCATGCTTATTGCCTGCAAATATGAAGAAGTTTCTGTGCCTGTTGTGAATGATCTCATCCTGATTTCTGATAAAGCTTACTGTAGGAAAGA AGTTCTGGACATGGAGAAGCTAATGGTTAATGCTTTGCAGTTTAACATGTCTGTTCCAACTCCATATGTTTTCATGAGGAGATTCCTAAAAGCTTCTCAA TATGACGAGAAGCTTGAACTTCTATCATTCTTCCTGCTGGAACTCTGCTTAGTTGAGTATGAAATGCTCAAGTTCCCACCTTCTCTGCAATCTGCTGCTG CAATCTATACAGCACAGTGCACTCTCACTGGATCTAGCCAGTGGAACAAGACTCAAGAACTGTATACTTGCTATTCAGAGGAGCAACTTCTGGAGTGTGC AAACTTGATGGTTGGGTTTCATCAGAATTCGGCGTCAGGAAGGCTCACTGGTGTTCACAGAAAGTACAACACTTCGAAGTTCGGATATGCAGCAAGAACT GAACCTGGTGTTGCTAACTTGCTGCAACTCTAG
AA sequence Show only first row Show all	>Lus10013226 pacid=23166638 polypeptide=Lus10013226 locus=Lus10013226.g ID=Lus10013226.BGIv1.0 annot-version=v1.0 MAGSDENNPGSIRASAVSAQGGGVVHAGLEKLPVTRRALSTINRNITGAPIHPSHKQSDKNPLVLHRPITRRFAAQLANKQEEELKDEESQDFPIGDAED FSTPMFVQHTEAMLEEIDRMDDEVEMEDASEEEEEDSVVDIDSCDDKNPLAVVEYIDELYAFYRKAEVSSAVPSNYMEQQFDIKERMRGILIDWLIEVHD KFELMEETLYLTVNLIDRFLAVESVVRKKLQLVGITAMLIACKYEEVSVPVVNDLILISDKAYCRKEVLDMEKLMVNALQFNMSVPTPYVFMRRFLKASQ YDEKLELLSFFLLELCLVEYEMLKFPPSLQSAAAIYTAQCTLTGSSQWNKTQELYTCYSEEQLLECANLMVGFHQNSASGRLTGVHRKYNTSKFGYAART EPGVANLLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	0	1
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	1.0	0.9714
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	2.0	0.9609
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	2.4	0.9655
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	3.0	0.9635
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	3.2	0.9604
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	8.8	0.9573
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	8.9	0.9448
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	9.8	0.9574
AT5G12930			unknown protein		Lus10031827 [exp]	11.0	0.9319
AT4G31880			unknown protein		Lus10018332 [exp]	11.2	0.9354

Compare expression of checked genes

Lus10013226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.