Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20575 418 / 5e-150 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G39630 58 / 9e-10 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030748 [exp] 454 / 2e-164 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10023414 [exp] 56 / 7e-09 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 55 / 1e-08 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 46 / 1e-05 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 44 / 7e-05 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010300 [exp] 418 / 4e-150 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G250900 [exp] 416 / 2e-149 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G055700 [exp] 52 / 1e-07 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.010G204000 [exp] 50 / 4e-07 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10013228 pacid=23166637 polypeptide=Lus10013228 locus=Lus10013228.g ID=Lus10013228.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAGAGTGGAAGAACGAAGGGAAGAACAAGTACAGCATAATTATCCCTACATACAACGAGCGTCTCAACATCGCCATCATCGTTTACCTCA TTTTCAAGCATCTCCGGGATATCGATTTTGAAATTATAGTTGTGGATGATGGAAGCCCCGACGGCACTCAAGATATTGTCAAGCAGTTGCAGCAAGTGTA TGGCGAAGACCGTGTTTTATTAAGAGCTAGACCGAAAAAGCTTGGTCTTGGCACGGCTTACGTTCATGGATTGAAGCATGCGTCTGGCAATTTTGTAGTA ATAATGGATGCTGATCTATCCCACCATCCAAAGTACCTGCCGAGCTTTATCAAGAAACAGTTGGAGACCAGTGCAAGTATCGTTACAGGAACCAGATATG TTACAGGTGGTGGTGTCCATGGTTGGAGTCTTATGCGGAAACTAACCAGCAGAGGAGCCAATGTCCTGGCTCAAACGTTCTTATGGCCTGGTGTCTCCGA CTTGACAGGATCTTTCCGGCTTTACAAGAAATCCGTGCTCGAAGACATCATAGCTTCAGTTGTTAGCAAAGGCTACGTATTTCAGATGGAAATGATAGTT CGTGCTTCCAGAAAAGGATACCGTATCGAGGAGGTACCGATTACATTCGTTGACCGCGTATTTGGAAGCTCGAAACTTGGAGGATCGGAAATTGTAGAAT ACCTGAAAGGCCTAGCTTATCTGCTGGTTACAACTTAG
AA sequence Show only first row Show all	>Lus10013228 pacid=23166637 polypeptide=Lus10013228 locus=Lus10013228.g ID=Lus10013228.BGIv1.0 annot-version=v1.0 MAEEEWKNEGKNKYSIIIPTYNERLNIAIIVYLIFKHLRDIDFEIIVVDDGSPDGTQDIVKQLQQVYGEDRVLLRARPKKLGLGTAYVHGLKHASGNFVV IMDADLSHHPKYLPSFIKKQLETSASIVTGTRYVTGGGVHGWSLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKSVLEDIIASVVSKGYVFQMEMIV RASRKGYRIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	0	1
AT1G28410			unknown protein		Lus10015403 [exp]	1.0	0.9078
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Lus10006096 [exp]	3.2	0.8653
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	6.3	0.8872
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	13.9	0.8750
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10006760 [exp]	14.1	0.8112
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	14.7	0.8701
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	15.0	0.8509
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	18.7	0.8411
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031107 [exp]	18.7	0.8766
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	19.2	0.8861

Compare expression of checked genes

Lus10013228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.