Plant FIBer expression Database

Lus10013229 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42330 132 / 2e-38 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030749
[exp]
335 / 8e-118 AT5G42330 142 / 2e-42 unknown protein
Lus10012265
[exp]
158 / 2e-48 AT5G42330 82 / 5e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G250800
[exp]
183 / 3e-58 AT5G42330 171 / 5e-54 unknown protein
Potri.002G010400
[exp]
160 / 2e-49 AT5G42330 142 / 2e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10013229 pacid=23166617 polypeptide=Lus10013229 locus=Lus10013229.g ID=Lus10013229.BGIv1.0 annot-version=v1.0
ATGAAATTCGATCGGAAGCCACCTCTTCCCAAATCGCCGATCCGCCTCCGCTCCCGAGTCACCTCCGCCTCCTTGCAGACTCCTCCCGGATCCTTGATGA
AATCGGCGAAACCTAGCCGCGCCTTCGGTTTCAACGACGCCGAGGAACTCCATCCGGAGTACCGCTCAATGTCCTGCGAGCTGCGGGCGCTGGCGAAGAT
GGTGAGGGACGAGCTCGGGAACGGAGATCCGCCAGCTAGATCCAGAAACGGAGAGAGTCTGAGCGCTAATTCGAGTCCGATGTCCTTCCAGAGAGGGAGG
CTCTACGAGGAGTATTCTGCCAGGAGGAACGAGCGGCTGAAGAGGAAGAGAGGCGGCGGCGGTGGTGGGAGTGAGGATTCGATGAGGACTCCGTACAGAT
TGGGGGTGACGGTGGCGTCGTCGAAGAGAAGGGACTCTGCGAAGAAGACGGAGAGCTTGAGGAAATCTGTGGTGGCGTCTGGTTATGGAGGAGGGGAGAC
TCCGAGGTATTTGTTGAGGAGTATGTGCAAGGAGAACAAGACTACGACGAAGCTGCCGCTGCCGGCGGCGGCTGCTCTTCGTATGCCGGCGGTTGAGTTG
GAGAGATCTACGATTCCGAGTGGACGGAAGATTAGAGTGAGGAGATCAGTTAGGAAGATCTGA
AA sequence
>Lus10013229 pacid=23166617 polypeptide=Lus10013229 locus=Lus10013229.g ID=Lus10013229.BGIv1.0 annot-version=v1.0
MKFDRKPPLPKSPIRLRSRVTSASLQTPPGSLMKSAKPSRAFGFNDAEELHPEYRSMSCELRALAKMVRDELGNGDPPARSRNGESLSANSSPMSFQRGR
LYEEYSARRNERLKRKRGGGGGGSEDSMRTPYRLGVTVASSKRRDSAKKTESLRKSVVASGYGGGETPRYLLRSMCKENKTTTKLPLPAAAALRMPAVEL
ERSTIPSGRKIRVRRSVRKI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42330 unknown protein Lus10013229
[exp]
0 1
AT1G50240 FU FUSED, Protein kinase family p... Lus10039168
[exp]
2.4 0.9567
AT1G67820 Protein phosphatase 2C family ... Lus10036871
[exp]
2.8 0.9481
AT4G33400 Vacuolar import/degradation, V... Lus10042656
[exp]
3.2 0.9642
AT1G16630 unknown protein Lus10006845
[exp]
5.7 0.9607
AT5G58280 B3 AP2/B3-like transcriptional fa... Lus10007522
[exp]
5.7 0.9544
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10039033
[exp]
6.7 0.9538
AT1G18600 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROT... Lus10018399
[exp]
7.7 0.9382
AT5G42330 unknown protein Lus10030749
[exp]
7.9 0.9498
AT5G56120 unknown protein Lus10008355
[exp]
9.2 0.9423
AT3G27330 zinc finger (C3HC4-type RING f... Lus10022324
[exp]
9.5 0.9512

Lus10013229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.