Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 341 / 2e-111 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 293 / 6e-94 Flavin-binding monooxygenase family protein (.1) AT4G28720 90 / 3e-19 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 81 / 3e-16 YUC9 YUCCA 9 (.1) AT1G12160 78 / 3e-15 Flavin-binding monooxygenase family protein (.1) AT5G11320 77 / 4e-15 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT1G63370 76 / 1e-14 Flavin-binding monooxygenase family protein (.1) AT5G43890 76 / 1e-14 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04610 76 / 2e-14 YUC3 YUCCA 3 (.1) AT2G33230 73 / 1e-13 YUC7 YUCCA 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023940 [exp] 520 / 0 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 438 / 5e-153 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 344 / 8e-113 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 343 / 2e-112 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 340 / 2e-111 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 306 / 2e-100 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 252 / 3e-79 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 165 / 3e-45 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10015529 [exp] 100 / 7e-23 AT4G30270 346 / 6e-119 SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250600 [exp] 691 / 0 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 541 / 0 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 517 / 2e-180 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 508 / 8e-177 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 370 / 2e-124 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 347 / 9e-114 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 328 / 2e-106 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.002G254200 [exp] 85 / 2e-17 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.010G062400 [exp] 84 / 6e-17 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G207400 [exp] 81 / 4e-16 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10013230 pacid=23166683 polypeptide=Lus10013230 locus=Lus10013230.g ID=Lus10013230.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGAGGATAGCCATAATCGGAGCTGGGATGAGCGGCTTACTAGCATGCAAGCATTTGATGGAAATGGGATTCACCCCAACAGTATTCGAGT CCAAGGACTGCTTAGGAGGAATCTGGTCACAGACCATCGAATCCACCAAGCTGCAGACCCCTAAATCGTATTACAAATTCTCTGACTTCGACTGGCCGGA TTCAGTCAAGGAGACGTTTCCCGATCACAACCAAGTTCTTGACTATTTCGAAGCGTATGCAGCTCGCTTCGACATCATCCCAAGAATCAAGTTTGATTCC AAGGTCGTTTCCATCGACTATCAGATGTCTTCCCCTTCGGAGGAAGATCATATGAGTTCGTGGAATTGGTGGGGCGGCACCGGGGACGCTTTCTCTGCCG CCGGGAAGTGGAATGTCCATGTGCAGAGTGCCTCCGATTCATCGTCACCTGTTGAGGTTTACCAGGCGGATTTTGTGATCCTGTGCATTGGAAGATACAG TGGACTGGCAAACAACCCAGAATTCCCAATTAACCAAGGGCCTGAAGTGTTCAACGGAGAAGCACTCCATTCCATGGATTACAGCAACATGGATGATGAA GCTGCGGCGGAGTTCACAAATAACAAGAGAGTTGTAGTTGTTGGGTTCCAGAAATCAGCTATAGACATCGCAGCAGAGATCGCCACTAGAAATGGACCCA AAAATCCATGTACTCTGCTGTTCAGAACCGTTCATTGGACTGTCCCTGAATTCTTCATCGAACAATCCCTAAAAACCCTCAACCGGTTTTCAGAACTCAT CGTCCACAAGCCCCGCGAAGGGTTCTTCCTATGGCTGCTTGCATTCCTCCTTACCCCTATGCTATGGATACAATCCAAAGCAGTGGAATCCTACCTGAAA TGGACGTACCCATTAAAGAAATACAACATGATTCCAAACCATAGCTTCTTCAAGCAGATCTTCAGCTGCATGTTCACCATTCTCCCCAACAATTTCTACC AACGAGTAAACGACGGAAGCCTCCTCCTCGTGAAATCCAAAACCTTCAGCTTCAACGAAAACGGTCTAATACTATCTCAAGAACAGCAACCAATTCCAGC CGAAATCGTCATCTTCGCCACTGGCTACAAAAGCACAGAGAAGCTCAAGAGCATCTTCAAATCCAGCTACTTCCAGAACTGCATTGCCAACTCAACGGCT CCATTTTACAGGGAATCCATTCATCCGAGAATCCCGCAGCTGGCGATCCTGGGCTATGCGGACAGTGCGTCGTACCTTTACACGACGGAGATGAGGAGCA AGTGGGTGGCGCATCTGCTCGCCGGGAAGTTCAAGTTGCCGTCGGTGAGGGAAATGGAAGATGAGACGAGAGAATGGGAGAAGTGGTCGAGGAAGTATGC TAAGGAGGATTACAAGAGTTCGTGTGCGAGTGTGAAGCTGCCGATTTTGTTCAACGATCTTCTGTGCAGAGATATGGGGCTAAGGTGGAGAAGGAAGAAT GGGGTGTTCCCTGAGCTGTTTGGGCCTTACTTGCCAGGTGATTATAAACATATGTTGTAG
AA sequence Show only first row Show all	>Lus10013230 pacid=23166683 polypeptide=Lus10013230 locus=Lus10013230.g ID=Lus10013230.BGIv1.0 annot-version=v1.0 MEEKRIAIIGAGMSGLLACKHLMEMGFTPTVFESKDCLGGIWSQTIESTKLQTPKSYYKFSDFDWPDSVKETFPDHNQVLDYFEAYAARFDIIPRIKFDS KVVSIDYQMSSPSEEDHMSSWNWWGGTGDAFSAAGKWNVHVQSASDSSSPVEVYQADFVILCIGRYSGLANNPEFPINQGPEVFNGEALHSMDYSNMDDE AAAEFTNNKRVVVVGFQKSAIDIAAEIATRNGPKNPCTLLFRTVHWTVPEFFIEQSLKTLNRFSELIVHKPREGFFLWLLAFLLTPMLWIQSKAVESYLK WTYPLKKYNMIPNHSFFKQIFSCMFTILPNNFYQRVNDGSLLLVKSKTFSFNENGLILSQEQQPIPAEIVIFATGYKSTEKLKSIFKSSYFQNCIANSTA PFYRESIHPRIPQLAILGYADSASYLYTTEMRSKWVAHLLAGKFKLPSVREMEDETREWEKWSRKYAKEDYKSSCASVKLPILFNDLLCRDMGLRWRRKN GVFPELFGPYLPGDYKHML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	0	1
					Lus10024189 [exp]	1.4	0.9345
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	2.6	0.8790
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	3.0	0.8993
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	4.6	0.8591
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	5.3	0.9106
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	6.6	0.8424
					Lus10018463 [exp]	12.5	0.8792
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10029432 [exp]	13.9	0.8507
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	14.7	0.8987
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	17.0	0.8852

Compare expression of checked genes

Lus10013230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.