Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 270 / 6e-86 HXXXD-type acyl-transferase family protein (.1) AT1G24420 231 / 5e-71 HXXXD-type acyl-transferase family protein (.1) AT1G24430 225 / 7e-69 HXXXD-type acyl-transferase family protein (.1) AT5G47950 225 / 9e-69 HXXXD-type acyl-transferase family protein (.1) AT4G15390 225 / 9e-69 HXXXD-type acyl-transferase family protein (.1) AT3G30280 218 / 6e-66 HXXXD-type acyl-transferase family protein (.1) AT5G23970 207 / 8e-62 HXXXD-type acyl-transferase family protein (.1) AT5G47980 204 / 7e-61 HXXXD-type acyl-transferase family protein (.1) AT4G15400 170 / 7e-48 HXXXD-type acyl-transferase family protein (.1) AT5G41040 147 / 2e-39 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 754 / 0 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 243 / 2e-73 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 228 / 9e-70 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 228 / 1e-69 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 228 / 2e-69 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 226 / 6e-69 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 225 / 1e-68 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 225 / 3e-68 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 223 / 6e-68 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 436 / 8e-151 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 393 / 5e-134 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 302 / 3e-98 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 289 / 2e-93 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 287 / 1e-92 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 287 / 4e-92 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 277 / 8e-89 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 273 / 2e-87 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 269 / 1e-85 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 262 / 4e-83 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10013231 pacid=23166682 polypeptide=Lus10013231 locus=Lus10013231.g ID=Lus10013231.BGIv1.0 annot-version=v1.0 ATGAAGCTGCAAGTAAAAATCACATCCAAACAAACCATAAAGCCATCTTCTCCGACGCCGCCGCACCTCAGAACCTTCAACCTCTCCTTACTCGACCAAC TCATCCCAGCTCCCTACGCTCCGCTCGTCCTCTTCTACCCCCGAGACGACGGCGTATCACTCTCCTCCTCTGAGATCGACATCCTTAAATCCTCCCTCTC CGACGTATTGGCCGCGTTCTACCCACTCGCAGGAACCATCTCCCCCGACGACCTGTCAATCGACTGCAATGACAAAGGAGTCAGCTTTGTCGAAGCCCGA ACTGATTGCTCCATGACCCATTTCCTCGATCGACCTGATCTCCTCTCGCTCCAGAAATTCCTCCCGGTCGATCCGGGGTTTCTAGAGGCAGAGCGGCGGC GCGTGGCTAACGTTCAGGTGACCGAATTCTCCTGCGGAGGGATCGCGGTTGCCGTGTGTATCTCCCACAAGATCCTTGATGGTGTCGGATTGAGCACTTT CCTCAAGGCCTGGACCACTGCAGCTCGTGATAGAAGTACACCTATCGTCGTTCCCAATTTCGTCGCCATGACTATGTTTCCGGCGAGGCAATCCACGTGG CTCCGAGACGCATCAATGCCTATGTGGGGATCGTTCTTCCGGACGGGGAAATGCGTAACCCGACGGATCGTGTTCGATTCGAAGTCAATCGAATCGCTCA AGGGTCGGGTAGCAGCTCCGGCCTCGCACCCGACCCGAGTCGAGGTCATCTCGGCTTTCCTCTGGAAATCAATGATGGAAGCAACGGAGAAACTGGCCGC CTCCGGCGGCCAGAAGCGAACTTCAGTACTAACTCACCTGGTTAACCTCCGGAAGCGGGTCGAACCACCGATGTCAGAGAATTCGATCGGAAACCTTCTC TGGATCTTGTCGGTGAAATCCGACCCGACGGCGGAGCGGGAACTGGGGGAATTGGCGGGAAAGGTTAGAGATTCCATATCGAAAATTGACGACGGGTTCG TGAGGAAGATGAGAGGGAAGGAAGGGAAAACGGTGATGGTTGAGACGATGGAGGAGATTGTAGAGGTGAAGAAGAACAGAGGGACGGCGGTGAATTTCTT GGCGTTTTCGAGCTGGTGCAGGATGGGGTTTTACGGGTCGGATTTCGGGTGGGGTGAGCCGGTTTGGGTGAGCAGCCACGGGCTGGAAGGTTCAGTGTTT CTGAATTTGGTGATATTGGCGGATACGAGGTGTGGAAAAGGGATCGAGGCTTGGGTTACGATGGACGATGCAGAGATTGCGGCTATGGCGGCTGATCCTG AAATGATCAAGTTTGCTAAATTCGATCCTAGTCCTCTTTCAGGAATTTGA
AA sequence Show only first row Show all	>Lus10013231 pacid=23166682 polypeptide=Lus10013231 locus=Lus10013231.g ID=Lus10013231.BGIv1.0 annot-version=v1.0 MKLQVKITSKQTIKPSSPTPPHLRTFNLSLLDQLIPAPYAPLVLFYPRDDGVSLSSSEIDILKSSLSDVLAAFYPLAGTISPDDLSIDCNDKGVSFVEAR TDCSMTHFLDRPDLLSLQKFLPVDPGFLEAERRRVANVQVTEFSCGGIAVAVCISHKILDGVGLSTFLKAWTTAARDRSTPIVVPNFVAMTMFPARQSTW LRDASMPMWGSFFRTGKCVTRRIVFDSKSIESLKGRVAAPASHPTRVEVISAFLWKSMMEATEKLAASGGQKRTSVLTHLVNLRKRVEPPMSENSIGNLL WILSVKSDPTAERELGELAGKVRDSISKIDDGFVRKMRGKEGKTVMVETMEEIVEVKKNRGTAVNFLAFSSWCRMGFYGSDFGWGEPVWVSSHGLEGSVF LNLVILADTRCGKGIEAWVTMDDAEIAAMAADPEMIKFAKFDPSPLSGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10013231 [exp]	0	1
AT5G62750			unknown protein		Lus10004267 [exp]	31.5	0.8238
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	79.8	0.7771
AT5G12340			unknown protein		Lus10009698 [exp]	82.9	0.7945
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	101.2	0.7787
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004785 [exp]	142.3	0.7776
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040762 [exp]	174.7	0.7651
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10000365 [exp]	189.0	0.7573

Compare expression of checked genes

Lus10013231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.