Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42440 1046 / 0 unknown protein AT1G06720 81 / 2e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030752 [exp] 1501 / 0 AT1G42440 1069 / 0.0 unknown protein Lus10007980 [exp] 85 / 1e-16 AT1G06720 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013507 [exp] 85 / 2e-16 AT1G06720 1225 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250100 [exp] 1144 / 0 AT1G42440 1075 / 0.0 unknown protein Potri.017G017700 [exp] 82 / 9e-16 AT1G06720 742 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF04950 [flax] [poplar] RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal CL0575 [flax] [poplar] PF08142 [flax] [poplar] AARP2CN AARP2CN (NUC121) domain
Representative CDS sequence Show only first row Show all	>Lus10013232 pacid=23166639 polypeptide=Lus10013232 locus=Lus10013232.g ID=Lus10013232.BGIv1.0 annot-version=v1.0 ATGGGAGGATCCCGTATCCAGGTTAACAAAGCTCACAAGACACGCTTCACCTCCAAATCGACTCGCAATCTTCACAAAACTTCTCTCAAAGACAAGAATA GGATTGCGAAATCCGAGAGCAATGTGGCGAAAGGAGGTCGAGCTGCTCGTCTGCAGCGCAACAAGATGCTCCGGGAGCATAATCGAGCTGCTGTTCTGAA GGAGAAAAGGGCTGCGAGTGGATCAACAAGCCCTCCGCGAGTTATTGTTCTTTTTGGTTTATCTGCCGCAGTGGATGTGGATACACTTGATGTAGATCTC TCGAATGTCTTATCCTCTCAAACTGGTGGCCGTCCATCTTCAGTAATTGCCTCCTCAGAGTTAAAAATGAGAGCAACGGTGTTGAAAGCACCACATGGGG ATTTGGTGTCATGCATGGAAATGGCGAAGGTCGCTGATCTCATTGCTTTTGTGGTATCAGCAGACTCTTTATGTGTAGATGGGAGTCCTGACTTCATCGA TTCCTTTGGGGACCAGTGTTTGTCAGTCTTCCGGTCACTAGGTTTGCCCAGCACAGCAGTATTAATTCGTGGTCTACCCCTGGAACTAAAAGGGAGAAGC GAGGCAAAGAAAATCTGTGCTTCTTGCCTTGCTGGTGAGTTTCCTGAGAATTGCAAGTTCTATCCTGCAGATACAAAAGATGATTTGCACAAGTTCCTGT CGCTATTTAAGGAGCAGAGGCTGACGGTACCTCATTGGAGACATCAAAGACCTTACCTTATGTCTCAGAAGGTTGATGTAGTAGCTGATAGCAGCAATGT GCATAATTGCACCCTACTTCTAACAGGGTATCTACGTGCTCGCAGCCTCTCAGTCAATCAGCTGGTTCATGTTTCTGGTGCGGGGGATTTTCAACAACTA AAAATTGAAGTTTTGAGGGATCCTTCTCCTTTAAATTTAAGAAAAGAACCAGATGCAATGGATGCAGAGGAGTTGCTTGATGCGGAGGTTGTCCGTACTC TGGTTCCTGATTCCATGGTGCAGGAGCCTTTGCTTGTTGAAAATATCCCTGATCCACTTGACCGAGAACAGACATACCCAACGGAGAAAGAACTGGAAGA GGCAGAGAAAAAACTGGAAGAGACAAATAATCACCAGAAACATAAATTCCCCAAAAAGAAAGTTGTTCCTCAGGGTACATCGGAATACCAGGCTGCATGG ATTGTGGATAGTTCGGATGAGGAAGGTCCTGATGGTGGAAGTGATATCGATGATGGCATGATGGTGGATGAAAGAGATGATCATTATCCTGGTCAAGACG ACTATAATGACACTGGTATCAAGGATGATCAAGCTTCTTTGCATCTTAGAGACATGGATGGTGATACTGAAACGGATTCTATTATGCCGGAAGTCGAAAA CTTAACAAGGGAACAAGTAGAGGACGAGATAAGAAGAATTAAAGAAGCTCATGCTGACGACGAGCAATTTCCAGATGAAGTGGATACTCCACTAGACACG CCTGCTAAGATGCGTTTTGCTAAGTACAGAGGTCTGAAGTCCTTCAGGACCTCATCATGGGACCCTAAAGAATCTCTTCCTGTGGACTATTCCAGAATTT TTGCTTTTGACAATTTTCAAAGGACACAGAAGCATGTTCTTGCAAAGGCTTTAGCAAATGATCAGGTTCAGTCAGATGACTGTGTACAAACTGGCCAGTA TGTAAGGCTTCATATCAAGGAAGTACCTATGCATATTGGACGTAAAATATATGAACTTGCAAAGGTAGTACCTCTGGTAGCTAGTGGACTTTTGCAGCAT GAGTCCAAGATGTCGGTTCTACATTTTAGCATAAAAAAGCATGATACATACGAGGCACCGATTAAAGCCAAAGAGGAACTGTTGTTTCACGTTGGTTTTA GGCAATTTATCGCTAGGCCTATATTCTCTACGGATAACATGAGTTCAGATAAACACAAGATGGAAAGGTTCCTTCATCCTGGCCGCTTTGCAATGGCATC AATTTATGCTCCGATTTCATTTCCTCCTCAACCCTTGATTGCTCTGAAGAAAGGGGAAGGAGATAGCGCTCCAGCAGTTGCTGCTGTTGGTTCCTTGAGA AGTATCAATCCGGACAGGATAATACTGAAAAAAATTATATTAACCGGCTATCCTCAACGGGTATCAAAACGGAAGGCTTCTGTAAGATACATGTTCCATA GCCCAGATGATGTCAGATGGTTCAAGCCTGTGGAGGTGTGGTCGAAGATTGGCCGCCGTGGTCGAATCAGGGAACCTGTTGGAACTCACGGTGCTATGAA GTGCATGTTTGATGGCATCCTACAGCAGAACGATACCGTCTGCATGAGCTTGTACAAGCGTGTGTATCCCAAGTGGCCGGATCACCGTTACCCTATGGTA GATGCTTGA
AA sequence Show only first row Show all	>Lus10013232 pacid=23166639 polypeptide=Lus10013232 locus=Lus10013232.g ID=Lus10013232.BGIv1.0 annot-version=v1.0 MGGSRIQVNKAHKTRFTSKSTRNLHKTSLKDKNRIAKSESNVAKGGRAARLQRNKMLREHNRAAVLKEKRAASGSTSPPRVIVLFGLSAAVDVDTLDVDL SNVLSSQTGGRPSSVIASSELKMRATVLKAPHGDLVSCMEMAKVADLIAFVVSADSLCVDGSPDFIDSFGDQCLSVFRSLGLPSTAVLIRGLPLELKGRS EAKKICASCLAGEFPENCKFYPADTKDDLHKFLSLFKEQRLTVPHWRHQRPYLMSQKVDVVADSSNVHNCTLLLTGYLRARSLSVNQLVHVSGAGDFQQL KIEVLRDPSPLNLRKEPDAMDAEELLDAEVVRTLVPDSMVQEPLLVENIPDPLDREQTYPTEKELEEAEKKLEETNNHQKHKFPKKKVVPQGTSEYQAAW IVDSSDEEGPDGGSDIDDGMMVDERDDHYPGQDDYNDTGIKDDQASLHLRDMDGDTETDSIMPEVENLTREQVEDEIRRIKEAHADDEQFPDEVDTPLDT PAKMRFAKYRGLKSFRTSSWDPKESLPVDYSRIFAFDNFQRTQKHVLAKALANDQVQSDDCVQTGQYVRLHIKEVPMHIGRKIYELAKVVPLVASGLLQH ESKMSVLHFSIKKHDTYEAPIKAKEELLFHVGFRQFIARPIFSTDNMSSDKHKMERFLHPGRFAMASIYAPISFPPQPLIALKKGEGDSAPAVAAVGSLR SINPDRIILKKIILTGYPQRVSKRKASVRYMFHSPDDVRWFKPVEVWSKIGRRGRIREPVGTHGAMKCMFDGILQQNDTVCMSLYKRVYPKWPDHRYPMV DA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42440			unknown protein		Lus10013232 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	1.7	0.9175
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	1.7	0.9249
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	3.0	0.8997
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	3.2	0.9203
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	3.3	0.8961
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	3.7	0.8938
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	5.3	0.9158
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	6.5	0.9035
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	6.5	0.8784
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	6.7	0.9147

Compare expression of checked genes

Lus10013232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.