Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63610 365 / 4e-126 unknown protein AT2G14910 92 / 1e-20 unknown protein AT5G14970 85 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030753 [exp] 536 / 0 AT1G63610 397 / 6e-139 unknown protein Lus10016008 [exp] 416 / 3e-146 AT1G63610 409 / 1e-143 unknown protein Lus10026601 [exp] 80 / 2e-16 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 69 / 1e-12 AT2G14910 380 / 8e-130 unknown protein Lus10014506 [exp] 62 / 1e-10 AT5G14970 329 / 5e-111 unknown protein Lus10032180 [exp] 59 / 2e-09 AT5G14970 327 / 4e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250000 [exp] 379 / 9e-132 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 369 / 1e-127 AT1G63610 431 / 3e-152 unknown protein Potri.009G092800 [exp] 85 / 4e-18 AT2G14910 421 / 9e-147 unknown protein Potri.001G298200 [exp] 77 / 1e-15 AT2G14910 419 / 1e-145 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013233 pacid=23166643 polypeptide=Lus10013233 locus=Lus10013233.g ID=Lus10013233.BGIv1.0 annot-version=v1.0 ATGAACTCTTTGACAGCGAAACCCTCAATTTGCATACCCAAATTAGCTTCTTCTTCATCTCTCAAATCGAATTGCCCTCAGTTGCGTTCTTCCGTGAGTT TTCCATGGAGACTGGAGAACATTGGTGGTGGTGGTGGTGGAGTGGGAAGGTTATTACTGAGAGTTCGAGCGAGTGAATCTTCTGGCGCTGAAGGTTCTTC TAATTCCTCCTCCGGCTCCATGCAGTCCGACGACGGTCTGAGGAGCAGGAGAGAAATCCTGTTGGATTATGTCAAGACTGTCCAGCCTGATTTCATGGAG CTGTTTTCTAAGCGTGCTTCACCACAAGTGGTTGATGCAATGCGGCAAACGGTGACCAATATGATTGGCTCTTTACCTCCGCAGTTCTTCACTGTGACTG TTAGCACTGTAGGTGAACATCTTGCCCAGCTTATGTACAGTGTTCTGATGACTGGTTACATGTTCAAGAATGCTCAATACCGGCTGGAGCTCCAAGAAAG CTTGGAGCAGGTTGCTCTTCCCGAGCCAAAAGAGAAGATGCTGGACGAGACAGATTATGCACCTGGTACGCAGAAGAATGTGACTGGCAATGTGATCAGG TGGAACAGCGTATCCGGTGCTGAAACAATAGATGCGAAGAAGTACATCGAAATTCTCGAGGCAGAGATAGAGGAGCTGAACCGGCAGGTTGGTAGGAAGA CCACATATGGCGGCAACGAGTTGCTTGATTACCTCAAGACTCTGGAACCCCAAAATTTGAAGGAGCTAACGAGTAGCGCTGGAGAAGATGTGGTTGTCGC AATGAACACGTTCATTAAGCGCCTTCTCGGGGTTGCAGATCCTGAAAAAGTTAAGGCAAGCCCGGCGGAGACTAGTGCAACTGAACTGGCTAAACTGCTC TACTGGCTGATGGTGGTTGGGTACAGCATTCGGAACATCGAAGTTCGGTTCGACATGGAACGAGTGCTGAGTTCGTCTCCGAAGTTGCCTGAGTTGCCTT CGGGAGATGCTGCATAA
AA sequence Show only first row Show all	>Lus10013233 pacid=23166643 polypeptide=Lus10013233 locus=Lus10013233.g ID=Lus10013233.BGIv1.0 annot-version=v1.0 MNSLTAKPSICIPKLASSSSLKSNCPQLRSSVSFPWRLENIGGGGGGVGRLLLRVRASESSGAEGSSNSSSGSMQSDDGLRSRREILLDYVKTVQPDFME LFSKRASPQVVDAMRQTVTNMIGSLPPQFFTVTVSTVGEHLAQLMYSVLMTGYMFKNAQYRLELQESLEQVALPEPKEKMLDETDYAPGTQKNVTGNVIR WNSVSGAETIDAKKYIEILEAEIEELNRQVGRKTTYGGNELLDYLKTLEPQNLKELTSSAGEDVVVAMNTFIKRLLGVADPEKVKASPAETSATELAKLL YWLMVVGYSIRNIEVRFDMERVLSSSPKLPELPSGDAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63610			unknown protein		Lus10013233 [exp]	0	1
AT2G35605			SWIB/MDM2 domain superfamily p...		Lus10034774 [exp]	1.0	0.7614
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	5.9	0.7120
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013171 [exp]	7.5	0.6956
AT1G77350			unknown protein		Lus10018864 [exp]	10.7	0.7342
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10036768 [exp]	12.8	0.7007
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	16.8	0.7126
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	16.9	0.7305
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	19.8	0.6786
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10042133 [exp]	20.1	0.7365
					Lus10013622 [exp]	24.7	0.7009

Compare expression of checked genes

Lus10013233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.