Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76270 755 / 0 O-fucosyltransferase family protein (.1) AT1G20550 733 / 0 O-fucosyltransferase family protein (.1) AT4G38390 649 / 0 RHS17 root hair specific 17 (.1) AT4G16650 530 / 0 O-fucosyltransferase family protein (.1) AT5G64600 317 / 2e-101 O-fucosyltransferase family protein (.1) AT2G01480 313 / 2e-99 O-fucosyltransferase family protein (.1) AT1G35510 311 / 6e-99 O-fucosyltransferase family protein (.1) AT1G14970 306 / 8e-97 O-fucosyltransferase family protein (.1) AT2G03280 302 / 2e-96 O-fucosyltransferase family protein (.1.2) AT1G38065 301 / 6e-96 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030754 [exp] 1095 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 888 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 682 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 638 / 0 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 563 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 556 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 550 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 545 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 318 / 2e-101 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249900 [exp] 822 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 798 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 686 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 664 / 0 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 562 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 555 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 315 / 4e-100 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 313 / 1e-99 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 313 / 2e-99 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 308 / 4e-98 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013234 pacid=23166635 polypeptide=Lus10013234 locus=Lus10013234.g ID=Lus10013234.BGIv1.0 annot-version=v1.0 ATGGCGTTCCACAGGCGACGCCAAAACGATCACAATCGTCTCCGCCGCTTGATGCTTCATTTGATCCCCGCCATATCTGTGTTCCTCCTCATTTTCTTCG CCGTCCTCTCATTCCTAGCTCCTTCACCTTACGATTCTGGTGACATGGTCAGACGCCTTAGGAATGCTGTAGGCGATGGTGTCCAGGACGTAGAAGCAGA GTCACATCCTGTTCTCCTTGTGCCGGATCGTGGCGGGACGTTGAATCGTGATATTTGGAGGTCGAGAAATTCCGAGTTCTTCTATGGATGCAGCAATGCT AGCGATAAATTTCCTAATGCTGATGCTATTACGAAATCGGATCGATATTTGCTGATCGCTACCAGTGGAGGGTTGAATCAACAGAGGACTGGGATCACAG ATGCTGTTGTAGCTGCTCGGATTCTTAATGCTACCCTTGTTGTGCCTAAGTTGGACCAGAACTCTTTTTGGAAGGATTCAAGTAACTTCTCCGAGATCTT TGATGTTGATTGGTTTATCTCTTTACTGCAAAACGATGTGAAAATCATAAAAGAGCTCCCGAGAAAGGGTGGGAGGATTTGGAATCCACACACAATGCGT GTTGCAAGGAAGTGTAGCCAGAGGTGTTATGAAACCAGAGTATTACCTGCTCTTTTGAAAAGGCATGCAATCCAGCTTGGCAAGTTTGATTACAGGCTAG CAAATAGGTTGGATACACAACTTCAGAAATTGCGATGCCGGGCTAATTACCATGCTTTGAGGTTTACCGAGCCAATTCGTAAAATGGGCGAGACTCTGGT CAACAGAATGACGATGCGAAGCGAGCATTATATTGCATTGCACCTTAGGTTTGAACCTGATATGCTGGCATTTTCTGGCTGCAATTATGGTGGAGGTGAT AGAGAAAATAAAGATCTGAGTGCCATACGGAAGAGGTGGAAAACTTTACATTCGAAGAACCCCGAGAAGGAAAGAAGGCATGGGAAATGCCCACTAACTC CACATGAAGTTGGTCTTATGTTAAGAGCATTGGGTTATGGGAAAGATGTTCATATATATGTGGCGTCGGGAGAAGTATACCGAGGTGAAGAGACATTGGC GCCTTTAAAGGCTCTTTTCCCTAACTTCCATACAAAGGAAACTCTCTTAAGCCATGAGGAGTTGCAGCCGTTTTCTTCATTCTCCTCTAGAATGGCAGCA CTTGACTTTATTGTTTGTGACGAAAGTGATGTATTTGTCACAAACAATAATGGTAATATGGCCAAGATATTAGCCGGTCGAAGGAGATATTTCGGACACA AACCAACCATTCGGCCAAATGCTAAGAAGCTTTATCGGCTGTTCCTGAACAGCAATAACATGACATGGGATGCATTCGCTTCAAAAGTTCGTACTTACCA GAAGGGATTCATGGGCGAACCTAAGGAGGTGAGGCCAGGCAGGGGAGAATTTCACGAGCATCCTCACACGTGCATCTGCGAGGACTCCGAAGGCAAGACG AGAAAGGAGTCCCCACCTAGAAAGCTAGGGAAAGGATATAATAATAACACAACTGCCGGAGATATCGGCAGTCAAAATCAAAACTCGGACGGTGAACCTG AACTGCTCGATCCAGATACTGATGATGATCAAGATGCGCTCGACGAGATGAATGTTTCCAACAACAGCACATCTTTGGACTACGACGGGTTCAACAATGA GGACCACGAGTTCGAAGACTTACTCTCTGACTGA
AA sequence Show only first row Show all	>Lus10013234 pacid=23166635 polypeptide=Lus10013234 locus=Lus10013234.g ID=Lus10013234.BGIv1.0 annot-version=v1.0 MAFHRRRQNDHNRLRRLMLHLIPAISVFLLIFFAVLSFLAPSPYDSGDMVRRLRNAVGDGVQDVEAESHPVLLVPDRGGTLNRDIWRSRNSEFFYGCSNA SDKFPNADAITKSDRYLLIATSGGLNQQRTGITDAVVAARILNATLVVPKLDQNSFWKDSSNFSEIFDVDWFISLLQNDVKIIKELPRKGGRIWNPHTMR VARKCSQRCYETRVLPALLKRHAIQLGKFDYRLANRLDTQLQKLRCRANYHALRFTEPIRKMGETLVNRMTMRSEHYIALHLRFEPDMLAFSGCNYGGGD RENKDLSAIRKRWKTLHSKNPEKERRHGKCPLTPHEVGLMLRALGYGKDVHIYVASGEVYRGEETLAPLKALFPNFHTKETLLSHEELQPFSSFSSRMAA LDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNAKKLYRLFLNSNNMTWDAFASKVRTYQKGFMGEPKEVRPGRGEFHEHPHTCICEDSEGKT RKESPPRKLGKGYNNNTTAGDIGSQNQNSDGEPELLDPDTDDDQDALDEMNVSNNSTSLDYDGFNNEDHEFEDLLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76270			O-fucosyltransferase family pr...		Lus10013234 [exp]	0	1
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	1.0	0.8731
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	3.7	0.8157
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	6.9	0.7785
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	8.9	0.7462
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	17.9	0.6933
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	21.6	0.7446
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	22.6	0.7167
AT1G14020			O-fucosyltransferase family pr...		Lus10030437 [exp]	28.1	0.7490
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	29.0	0.7034
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	31.7	0.6982

Compare expression of checked genes

Lus10013234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.