Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 269 / 3e-89 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 234 / 2e-75 RING/U-box superfamily protein (.1.2.3) AT3G19950 151 / 2e-43 RING/U-box superfamily protein (.1) AT3G10815 124 / 2e-34 RING/U-box superfamily protein (.1) AT1G60360 121 / 5e-32 RING/U-box superfamily protein (.1) AT1G55530 120 / 2e-31 RING/U-box superfamily protein (.1) AT3G13430 115 / 1e-29 RING/U-box superfamily protein (.1.2.3) AT5G56340 115 / 2e-29 ATCRT1 RING/U-box superfamily protein (.1) AT3G46620 113 / 2e-28 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G26400 112 / 3e-28 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030755 [exp] 446 / 5e-159 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 266 / 2e-88 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001582 [exp] 167 / 6e-51 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 147 / 2e-42 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10025612 [exp] 130 / 3e-35 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 130 / 3e-35 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10004712 [exp] 120 / 2e-31 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 118 / 2e-31 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 114 / 1e-29 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029300 [exp] 342 / 4e-118 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 337 / 6e-116 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.007G074014 [exp] 149 / 1e-42 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 144 / 4e-41 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 145 / 5e-41 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 141 / 2e-39 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 141 / 2e-39 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 127 / 4e-34 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 117 / 2e-30 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 115 / 5e-30 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10013235 pacid=23166601 polypeptide=Lus10013235 locus=Lus10013235.g ID=Lus10013235.BGIv1.0 annot-version=v1.0 ATGTCAAGCAGCAGAAACACCCACTGGTGCTATAGATGCAGGAGAGGAATCTATATACGAGGACGAGATTCCGTTTGCCCATTCTGTGATGGCGGATTCA TCCAAGAACTTGAGGAAATGAGCCACGCCGGCCCTCTGGATTACTTCGGACACGCCAGTGACATTGGCCATGACCACAGGTTCGGCCTCATGGAAGCCTT TTCAGCCCTCGTACGCCAAAGAGCTAACGATCATGGAACGAGGGCTAGATCAGACCCTGTACCCGAACATGGCGCTGGATTCAGTCCGCTGTTGATTTTC GGAGGCCAAATCCCTGTTCGCCTGTCCGGAAACGGTGGTTTCGACACCCTTTTCCCCGGAGCTCCCGGAATCGGTTTCGCCAGGGGCAATGGTGGCGATT ACTTCATCGGTCCCGGACTGGAAGAGTTGTTCGAGCAGCTCTCGACGAACGACAGGCGCGGACCTGCACCGGCATCCAGATCATCGATCGATGCATTGCC GACTATCAAGATAACTCAAAGGCACCTCCGTTCCGATTCACATTGCCCGGTCTGCAAGGATCAATTCGAGGCGGGATCCGAAGCGAGACAAATGCCTTGT AACCACATGTATCACTCGGACTGCATAGTTCCGTGGCTCGAACAACATAACTCATGCCCGGTCTGTCGGCAGGAGCTTCCTCTGCAGGGTGGTTCAAGTA GCAGCAGCAGGAGCTGCCCTAGTTCGAGTTCAAGAACTAGGAGCAGCAGAAGGGAGAGCGGGCGAGAAGGGAGAAGAAATCCTTTCTCGAGTTTGTGGCC TTTTCGGAGCTCGAGCTCGAGTTCTAACCAGAGCAGGACGAGCAGGAGCAGCTCGAGTTCGACGACGATGAACGATAATTCTCATCACCACCAGGTGGGT TATTCGGGGTGGCCATTTGACTAA
AA sequence Show only first row Show all	>Lus10013235 pacid=23166601 polypeptide=Lus10013235 locus=Lus10013235.g ID=Lus10013235.BGIv1.0 annot-version=v1.0 MSSSRNTHWCYRCRRGIYIRGRDSVCPFCDGGFIQELEEMSHAGPLDYFGHASDIGHDHRFGLMEAFSALVRQRANDHGTRARSDPVPEHGAGFSPLLIF GGQIPVRLSGNGGFDTLFPGAPGIGFARGNGGDYFIGPGLEELFEQLSTNDRRGPAPASRSSIDALPTIKITQRHLRSDSHCPVCKDQFEAGSEARQMPC NHMYHSDCIVPWLEQHNSCPVCRQELPLQGGSSSSSRSCPSSSSRTRSSRRESGREGRRNPFSSLWPFRSSSSSSNQSRTSRSSSSSTTMNDNSHHHQVG YSGWPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	0	1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10030755 [exp]	1.4	0.7915
AT5G56190			Transducin/WD40 repeat-like su...		Lus10021975 [exp]	6.6	0.7455
AT1G54920			unknown protein		Lus10029936 [exp]	7.2	0.7083
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	13.7	0.6912
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	15.2	0.7302
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	20.8	0.6689
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	30.6	0.6557
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	33.3	0.6396
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	33.7	0.6991
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	36.9	0.6960

Compare expression of checked genes

Lus10013235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.