Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02650 459 / 2e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 110 / 4e-25 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G06580 106 / 4e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18390 104 / 8e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G41170 104 / 1e-23 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 104 / 2e-23 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63400 102 / 1e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 100 / 4e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 98 / 1e-21 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16640 98 / 2e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030756 [exp] 963 / 0 AT3G02650 484 / 3e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 107 / 5e-24 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 105 / 2e-23 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 100 / 5e-22 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 100 / 7e-22 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 99 / 1e-21 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 99 / 2e-21 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003575 [exp] 97 / 3e-21 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 97 / 1e-20 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361500 [exp] 534 / 0 AT3G02650 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 118 / 8e-28 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 109 / 6e-25 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 108 / 1e-24 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 107 / 4e-24 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 106 / 4e-24 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 105 / 8e-24 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 102 / 7e-23 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 102 / 8e-23 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 102 / 1e-22 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013236 pacid=23166685 polypeptide=Lus10013236 locus=Lus10013236.g ID=Lus10013236.BGIv1.0 annot-version=v1.0 ATGTGGAGGTCCGTCGCCGCCAAATCGGGTAGTAGGGTTACGCAAATCCTCGACAAGGTACTTCTCCGACCTCAATCTCATTCATCTCAGCACCTCCGCA GCAGATTTCTCTCTATTACCTCATCCGCCACCCCAACCCTAGAAGAAACCCCGCCGCCGCCAACCTCCAACACTGCGGCGGAGGGTTTCGACTTTCCTTC GGCTCCCATTCATGACAGTCATGCCGCTAGTGTCGATGACGAACTATTAGATCAGGAAGATGCCGATAGTGAGCAGTTGAACGGAGCTGAAACTTTCAGC TCCATCGATGAATTCGGAAATGCTCGTGAAATTGATCCGGAGAAGCTGGAGATGGTTCTGTCTCTGCTCCAGAGCAGTGCCGACGGGTCTCTCGAGTCGA CGCTGAACAGCTTGGAGTTAGATCTGCACGAAGAGTTCGTTATAAGAGTGGCCGAAACTCCAAAACTTTTGGGGGAGAATTTGATTAGGTTTTTCATCTG GATTCGAAACAAGCCTGGTGGTTCAGTGTTGTTCACTTCTCAATCTCTCACCGCTCTTGTTCAGGCAATTTGCAGCGACTGTGTAATGCGGAAGAAGAAT GCTTACGCACTGTGGGACTTGATCTTGGAAGTTGGTAGTGCTAAGGCAGATGATGATAATGCTACGATTCTGAATACTAAAATGCTTAACCCTCTGATCG AGCTATTATCGAAGCTGGGAAAGGCGAAAGTAGCTTATGAGATTTTCAACAAGCTAGAGGAGTTAGGCTGTGTCCTCGATTCAGACACATACTACTTCAC GATCGAGGCGTTATGCCGAAGATCATTCTTCGACTGGGCGTGGACGGTTTGCGAGAAAATGCTGAACGCGCAAGCTCTCCCCAAGGATCCTAACCAGATC GGTAAGATCATAACGTGGTTCTGCAGAGCAAATCGGCCGAAAGATGCACATTCGGTTTTCGTTCTAGCGAAGGAGAAGACTCCTCAATCGGTTCTGAACT ACTTGGTTGCTTCGCTCGCTCACAAGGACGAAACCGTCAAATTAGCCCTCGAAATGCTGGACTGCTATACCGGAGAATTTCGAAAGTACGCGATCAAACC TTTCTCTTCGGTTATGCACGGCTTGTGCAGGTTGAAAGATGTCACCGAGGCGAAGTCGTTGCTCACCAAGATGATTTCCGACGGTCCACCTCCGGGAAAC GCCATCTTCAATTTGTTGATCAATGCTTACTCGAAAACTGGGAATATGCTCGGAGCGATGGGGATGATGAAGCTGATGAAGAAGAGAGGGCTGAAACCGG ACGTGTATACTTACACGGTAGCGATGAGCGGCTACGTCAGTGGAGGATGCATGGACGAGGCTCGAAGGTTACTCGCCGAAGCGAAAAAGAAGCATACGAA GCTGACTCCGGTGACTTACCACACGCTGATTCGAGGATACTGCAAGCTCGAACAGTACGACGAGGCTTTGTCGTTGCTGGGGGAGATGAAGGAGTTTGGT GTTGAGGCTAGTGTGGATGAGTATACTAAGCTGATTCAGTCTCTTTGTTTGAAGGCGTTGGATTGGAGGAGAGCTGAAGAGCTGCTGGCACAGATGAAGG AGAGCGGTTTGCATCTGAATGGGATTACAAAGGGGCTTATCAGTGCTGTCAAGGAGCTCGACGAGGAGGAGAAATTAAGCATTGCGGCATAA
AA sequence Show only first row Show all	>Lus10013236 pacid=23166685 polypeptide=Lus10013236 locus=Lus10013236.g ID=Lus10013236.BGIv1.0 annot-version=v1.0 MWRSVAAKSGSRVTQILDKVLLRPQSHSSQHLRSRFLSITSSATPTLEETPPPPTSNTAAEGFDFPSAPIHDSHAASVDDELLDQEDADSEQLNGAETFS SIDEFGNAREIDPEKLEMVLSLLQSSADGSLESTLNSLELDLHEEFVIRVAETPKLLGENLIRFFIWIRNKPGGSVLFTSQSLTALVQAICSDCVMRKKN AYALWDLILEVGSAKADDDNATILNTKMLNPLIELLSKLGKAKVAYEIFNKLEELGCVLDSDTYYFTIEALCRRSFFDWAWTVCEKMLNAQALPKDPNQI GKIITWFCRANRPKDAHSVFVLAKEKTPQSVLNYLVASLAHKDETVKLALEMLDCYTGEFRKYAIKPFSSVMHGLCRLKDVTEAKSLLTKMISDGPPPGN AIFNLLINAYSKTGNMLGAMGMMKLMKKRGLKPDVYTYTVAMSGYVSGGCMDEARRLLAEAKKKHTKLTPVTYHTLIRGYCKLEQYDEALSLLGEMKEFG VEASVDEYTKLIQSLCLKALDWRRAEELLAQMKESGLHLNGITKGLISAVKELDEEEKLSIAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	1.0	0.9773
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	1.7	0.9646
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	2.0	0.9619
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	2.4	0.9554
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	4.7	0.9688
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	5.0	0.9341
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	5.5	0.9420
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	6.0	0.9457
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	7.3	0.9501
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	8.9	0.9480

Compare expression of checked genes

Lus10013236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.