Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68050 841 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 687 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 640 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G51550 95 / 3e-20 Kelch repeat-containing F-box family protein (.1) AT1G74150 79 / 4e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G03445 79 / 6e-15 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G58140 79 / 6e-15 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G18610 76 / 4e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 72 / 8e-13 ACBP4 acyl-CoA binding protein 4 (.1.2) AT3G45780 71 / 1e-12 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030757 [exp] 1134 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10019169 [exp] 915 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 887 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 703 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 689 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 684 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 549 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10017457 [exp] 88 / 5e-18 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 84 / 7e-17 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105700 [exp] 874 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 848 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 711 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 700 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G006300 [exp] 104 / 1e-23 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.010G252200 [exp] 100 / 6e-22 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.015G059400 [exp] 82 / 4e-16 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 79 / 3e-15 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 79 / 4e-15 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 79 / 4e-15 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10013237 pacid=23166582 polypeptide=Lus10013237 locus=Lus10013237.g ID=Lus10013237.BGIv1.0 annot-version=v1.0 ATGGAGGAATCCGATGATCAGGTTACTGGAGAAGGAGAGGAGAAGGTGCAGAGCTATGGGAAACGGCAGAGATGCCGAAAACCTGTTGAAGTCGAAGTAG ATGGAGAGGAATCAGAAGATGATGAAGAAGAAGAATCTGAGCTCTCGTTCGGTTCGAATCCTTTCTTCTACCCGACGACTCCGACTTCCTTCGTCGTTTC CGATGCTTTTGATCCTGATTTCCCTATCATTTACGTCAACAAGGTGTTCGAGATCTCCACTGGCTACCGCGCTCATGAAGTCCTCGGCCGCAGCTGCCGG TTCTTGCAGTTTAGGGATCCTCGAGCTCAGAGGCGGCATCCGCTGGTGGATCCAGTGGTTGTTTCCGAAATCAGAAGGTGTCTTGATGAATCGGTTGAAT TCCAGGGGGAGATTTTGAACTTCAGGAAGGATGGAACTCCGTTAGTGAACAGGTTGAAGCTTACTCCTATCTACGATGATGATGGCACCATCACTCACAT AATTGGCATTCAAGTGTTTCTGGAAGCCAATATCGATCTCGACCAGCTTTCGTATCCGGTTTTCAAAGAGATTGATTCATCCCATGAACACAACTACGAG AATCACTTGGCACCTTGTACTACTACATGTGCTATTCCGTTGGATGAGAATCAGGCGCACCAGAACAATCAGGAGATGTGCGGGATTCTAGAGTTGTCTG ACGAAGTGCTGGCCCAAAACATCTTGTCACAGTTGACTCCGAGGGATGTTGCATCCATTGGCTCCGTGTGTAGGAGGATCCACCACTTGACGAAGAACGA ATACGTGAGAAAGATGGCTTGCCAGAATTCTTGGGGAAGGGAAGTTACCGGTGCGCTTGAGTCGATGACGAAAAAGCTAGCTTGGGGACGCTTGGCTAGG GAGCTAACCACTCTCGAAGCAGCATGCTGGAGGAAGCTTACTGTCGGTGGAGCAGTCGAGCCTTCTCGTTGCAATTTCAGCACATGTGCATCCGGTAATC GACTCGTCTTGTTCGGTGGAGAAGGAGTTGATACACAGCCGATGGATGACACTTTTGTGCTCGATCTCGACGCAACTAATCCAGCCTGGAAGAGGGTGAT GGTGATGAAATCTCCCCCGGGGCGATGGGGGCATACTCTATCCTGCTTCAATGGTTCTTGGTTAGTAGTGTTTGGTGGGTGTGGAAGGGAAGGGTTGCTC AACGATGTCCATGTTATGGACTTGGACGCGAAGCATCCAACATGGAAGGAAATCTCCGGAGCATTTCCTCCCCTTCCGAGATCCTGGCACAGCGCTTGCG CAGTCGAGGGCTCTAAACTCATTATCTTCGGTGGATGCACAGATGCCGGAGTACTTCTCAACGACACATACTTATTGGACCTAACAATCAACAATCCCAC TTGGATAGAAGTCGTTCCGACTCTATGGTCACCGCCATCCCGGCTGGGACATTCACTATCCGTCTATGGTGGGACCAAGATCATGATGTTTGGCGGTCTA GCCAAGAGCGGTCACTTGCAGTTGAGATCGGGCGAAGCCTATACCCTCGATCTAGGAGACGACCTGCCGGAATGGAGGCAAGTAGACTGTTCGGCATTTA CCGGAGTTGGCAGCCAAAGCTGCGTGGTTCCGCCTCCTAGACTCGATCACGTTGCGGTTAGCATGCCTTGTGGGAGGATCATCATCTTCGGCGGTTCGAT CGGTGGGTTGCATTCACCTTCGCAGCTCTTTCTCTTAAACCCAGCTGAGGAGAAGCCTTCATGGAAGACTCTCAATGTTCCCGGTCAGCCACCGAAATTC GCCTGGGGCCATAGTACCTGCGTTGTCGGAGGGACTAAGGTTCTGGTTTTGGGTGGACACACGGGCGAGGAATGGATACTCAACGAACTGCACGAGCTGT CCGTCGCAACCCGACAGGACTTAGATGCTTAA
AA sequence Show only first row Show all	>Lus10013237 pacid=23166582 polypeptide=Lus10013237 locus=Lus10013237.g ID=Lus10013237.BGIv1.0 annot-version=v1.0 MEESDDQVTGEGEEKVQSYGKRQRCRKPVEVEVDGEESEDDEEEESELSFGSNPFFYPTTPTSFVVSDAFDPDFPIIYVNKVFEISTGYRAHEVLGRSCR FLQFRDPRAQRRHPLVDPVVVSEIRRCLDESVEFQGEILNFRKDGTPLVNRLKLTPIYDDDGTITHIIGIQVFLEANIDLDQLSYPVFKEIDSSHEHNYE NHLAPCTTTCAIPLDENQAHQNNQEMCGILELSDEVLAQNILSQLTPRDVASIGSVCRRIHHLTKNEYVRKMACQNSWGREVTGALESMTKKLAWGRLAR ELTTLEAACWRKLTVGGAVEPSRCNFSTCASGNRLVLFGGEGVDTQPMDDTFVLDLDATNPAWKRVMVMKSPPGRWGHTLSCFNGSWLVVFGGCGREGLL NDVHVMDLDAKHPTWKEISGAFPPLPRSWHSACAVEGSKLIIFGGCTDAGVLLNDTYLLDLTINNPTWIEVVPTLWSPPSRLGHSLSVYGGTKIMMFGGL AKSGHLQLRSGEAYTLDLGDDLPEWRQVDCSAFTGVGSQSCVVPPPRLDHVAVSMPCGRIIIFGGSIGGLHSPSQLFLLNPAEEKPSWKTLNVPGQPPKF AWGHSTCVVGGTKVLVLGGHTGEEWILNELHELSVATRQDLDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	1.0	0.9808
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023230 [exp]	2.4	0.9119
AT2G21960			unknown protein		Lus10006822 [exp]	3.5	0.8571
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	3.6	0.7864
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10008878 [exp]	4.5	0.8190
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	6.7	0.7948
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	9.8	0.8306
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	11.2	0.7814
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	11.2	0.7974
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	12.0	0.7429

Compare expression of checked genes

Lus10013237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.