Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24764 775 / 0 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G68060 763 / 0 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT2G01750 724 / 0 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2) AT1G14840 719 / 0 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT4G17220 322 / 6e-103 ATMAP70-5 microtubule-associated proteins 70-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030758 [exp] 1004 / 0 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 538 / 0 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10000642 [exp] 397 / 3e-134 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10038790 [exp] 363 / 2e-118 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10003908 [exp] 65 / 9e-13 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1) Lus10039069 [exp] 58 / 3e-10 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135100 [exp] 850 / 0 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.010G106100 [exp] 841 / 0 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.006G039200 [exp] 664 / 0 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.016G036300 [exp] 662 / 0 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.006G018000 [exp] 368 / 5e-120 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1) Potri.016G006900 [exp] 363 / 5e-118 AT4G17220 453 / 1e-154 microtubule-associated proteins 70-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [flax] [poplar] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Lus10013238 pacid=23166597 polypeptide=Lus10013238 locus=Lus10013238.g ID=Lus10013238.BGIv1.0 annot-version=v1.0 ATGCTGCTACGGCGGGGNNNNNNNNNNNNNNNNNNCCCCACCACGCCTACTTCGGCGCCGCCGCCGCTTGCGGTGTCGGGATCCTTCAAGGAAGGCTCGA AGAACTCGTCGTCGAGGAGGAGAACGGCAGCAGCTAGGAAGAGCATCGACGCTGACAATGAGTTCATGACCTTGCTGCACGGCTCGGATCCGGTCAAGGT GGAGCTCAATCGGCTTGAGAATGACGTTAGAGATAAGGACAGAGAACTCAGTGAAGCTCAGGCGGAGATCAAGGCTTTGAGACTATCGGAACGACTTCGA GAGAAGGCCGTTGAGGAGCTGACTGATGAACTCTCAAAAGTGGATGAAAAGCTGAAGCTAACTGAATCCCTCTTAGAAAGCAAGAATCTTGAAATTAAGA AGATCAATGATGAGAAGAAGGCTGCCATGGCTGCTCAGTTTGCAGCAGAAGCTACTCTTAGGAGAGTCCATGCTGCTCAGAAGGATGATGATATGCCTCC TATTGAGGCCATTCTTGCTCCTCTGGAAGCTGAGCTTAAGCTTGCTCGCCAAGAGATTGCGAAACTTCAAGATGATAACAAGGCTTTGGATCGTCTCACC AAATCTAAAGAAGCTGCACTGCTTGAAGCTGAGAGAACCATTCAGATTGCCATGGCTAAGGCCTCCATGGTGGATGATCTCCAAAATAAGAACCAGGAGT TGATGAAGCAAATAGAAATTTGTCAGGAAGAAAATAAGATTTTGGACAAAATGCATAGACAAAAGGTTGCCGAGGTTGAAAAACTTACCCAAACTGTAAG GGAGCTGGAAGAGGCAGTCCTTGCTGGTGGTGCTGCAGCCAATGCTGTTAGGGATTACCAGCGGAAAGTTCAAGAGATGAATGAGGAAAGGAAAACCTTA GACCGGGAATTGGCTCGGGCAAAGGTAACAGCAAACAGGGTAGCAACAGTAGTAGCAAATGAATGGAAAGATTCTAATGACAAAGTTATGCCAGTAAAAC AATGGCTTGAAGAGCGAAGATTTTTACAGGGAGATATGCAGCAACTTCGTGACAAACTCACTATAGCTGAGCGAGCTGCAAAATCTGAAGCACAGCTGAA AGAGAAATATCAGTTGCGACTCAAAGTTTTGGAAGAGACCTTGAGAGGGTCAGCAAGTAATAGTCGCAGTGCATCAGATGGGAGGAGTGCCAGTAATGGG CCGTCTCGGCGCCAGTCCTTGGGCGGAGCTGATAACCTCTCTAAGTATACCTCCAATGGCTTTCTGCCCAAGAGATCACCATCATCTCAGTTGAGAGCTT TTTCTTCTAGTACTAGTTCTGTGCTGAAGCATGCTAAAGGGACATCCAAATCCTTCGACGGTGGCACGAGATCACTGGATAGGGGTCGCAAAGCGCTCCT TAATGGACGCAGTCCGAATAGCTCTTTCAACCAGCCTTCGGATGTTCCCAAGGATACAGAGGACTCAAATATTTCGAAAGGAAATCCAGAGGAAAAGCTT GCTGATGTTCCGCAAGCAGATACAGAAGATAGTGTCCCTGGGATGTTGTACGATTTGCTGCAAAAGGAGGTTGTTGCTTTGAGGAAAGCTGGTCATGAAA AAGATCAAAGCCTCAAAGATAAGGACGATGCAATTGAGATGTTAGCAAAGAAAGTAGAAACGTTAACCAAAGCTATGGAAATTGAGGCAAAGAAGATGAG AAGAGAAGTAGCTGCCATGGAGAAGGAGGTTGCTGCCATACGTGTGGAGAAAGAACATGAAAACAGAGCAAAGCGATTTAGTCACTCGAAAAGCACCGTA TCTGCAGCCCAGATACTTCCTTCAAGCGCTTTTGCTATGAAAAAGCCTAAAGCTAAGTCTATTACAGAGCACACGGAAGTTGAATGCTGA
AA sequence Show only first row Show all	>Lus10013238 pacid=23166597 polypeptide=Lus10013238 locus=Lus10013238.g ID=Lus10013238.BGIv1.0 annot-version=v1.0 MLLRRXXXXXXXPTTPTSAPPPLAVSGSFKEGSKNSSSRRRTAAARKSIDADNEFMTLLHGSDPVKVELNRLENDVRDKDRELSEAQAEIKALRLSERLR EKAVEELTDELSKVDEKLKLTESLLESKNLEIKKINDEKKAAMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLT KSKEAALLEAERTIQIAMAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTL DRELARAKVTANRVATVVANEWKDSNDKVMPVKQWLEERRFLQGDMQQLRDKLTIAERAAKSEAQLKEKYQLRLKVLEETLRGSASNSRSASDGRSASNG PSRRQSLGGADNLSKYTSNGFLPKRSPSSQLRAFSSSTSSVLKHAKGTSKSFDGGTRSLDRGRKALLNGRSPNSSFNQPSDVPKDTEDSNISKGNPEEKL ADVPQADTEDSVPGMLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLAKKVETLTKAMEIEAKKMRREVAAMEKEVAAIRVEKEHENRAKRFSHSKSTV SAAQILPSSAFAMKKPKAKSITEHTEVEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	1.0	0.9781
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	1.4	0.9170
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	3.2	0.8994
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	4.6	0.8925
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	4.9	0.9108
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	5.2	0.8889
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	6.0	0.8965
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	6.6	0.9092
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	7.7	0.8861
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	7.7	0.8852

Compare expression of checked genes

Lus10013238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.