Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14810 620 / 0 semialdehyde dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030759 [exp] 683 / 0 AT1G14810 603 / 0.0 semialdehyde dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105300 [exp] 642 / 0 AT1G14810 629 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.008G135700 [exp] 636 / 0 AT1G14810 617 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.010G105000 [exp] 622 / 0 AT1G14810 596 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.004G145700 [exp] 44 / 0.0001 AT2G19940 618 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01118 [flax] [poplar] Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02774 [flax] [poplar] Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10013239 pacid=23166655 polypeptide=Lus10013239 locus=Lus10013239.g ID=Lus10013239.BGIv1.0 annot-version=v1.0 ATGGCGGCCACTTTCACTCATCCCCACAACCTCTTCTCCACATCCTCCATCCCCAAACAATCCCTCATCGCCAAACCGCGCCACTCCCCATTCACAGTCC GCATGTCCCTCCAGGAAAACGCCCCGTCTCTAGCCGTCGTCGGCGTAACGGGAGCCGTCGGCCAGGAGTTCCTCTCCGTCCTCTCCGACCGCGATTTCCC GTACCGGTCGATCAAGATGCTCGCCTCTAAGCGCTCCGCGGGAAAGCCGATGACTTTCCAGGACAGGAGCTACACAGTGGAGGAGCTGACCGCCGACAGC TTCGACGGCGTCGATATAGCCCTTTTCAGCGCCGGCGGGTCGATTAGCAAGGCGTTTGGGCCGGCGGCAGTGGAGAAGGGAACCATTGTGGTGGATAACA GCTCGGCGTTTCGGATGGTTGATGGGATTCCTCTTGTGATTCCTGAAGTGAATCCTGAGGCTATGGATGGAATTAAAGTTGGGATGGGGAAAGGGGCTTT GATTGCTAACCCTAATTGTTCTACCATTATCTGCTTGATGGCTGCCACTCCTTTGCATAGACGTGCCAAGGTGCTACGCATGGTTGTTAGTACATATCAG GCAGCGAGTGGTGCTGGTGCTGCAGCCATGGAAGAGCTTGAACTGCAGACTCGTGAGGTGCTGGAAGGATCTCCGCCGACTTGTAACATATTCAGTCAGC AGTATGCTTTTAATCTGTTTTCACACAATGCGCCTGTTCAAGAAAATGGGTACAATGAAGAAGAGATGAAATTAGTGAAAGAGACCAGAAAAATCTGGAG CGACTTGGATGTTAAGGTCACTGCTACCTGTATACGAGTCCCTGTCATGCGCGCTCATGCCGAGAGTATTAACCTCCAATTCGAGAAGCCACTTGACGAG GATACAGCAAGGGAGATTCTGAAGAATGCGGCAGGAGTTGTGGTGATCGACGACCGCGCATCCAATCATTTCCCCACACCGTTGGAAGTATCGAACAAGG ATGACGTGGCAGTGGGAAGAATCCGTCGAGATCTTTCTCAAGAAGGGAACCACGGGCTGGACATCTTCGTATGTGGGGATCAAATACGAAAGGGAGCCGC CCTGAATGCCATTCAGATTGCAGAGATGCTGCTATAG
AA sequence Show only first row Show all	>Lus10013239 pacid=23166655 polypeptide=Lus10013239 locus=Lus10013239.g ID=Lus10013239.BGIv1.0 annot-version=v1.0 MAATFTHPHNLFSTSSIPKQSLIAKPRHSPFTVRMSLQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKPMTFQDRSYTVEELTADS FDGVDIALFSAGGSISKAFGPAAVEKGTIVVDNSSAFRMVDGIPLVIPEVNPEAMDGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVLRMVVSTYQ AASGAGAAAMEELELQTREVLEGSPPTCNIFSQQYAFNLFSHNAPVQENGYNEEEMKLVKETRKIWSDLDVKVTATCIRVPVMRAHAESINLQFEKPLDE DTAREILKNAAGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDLSQEGNHGLDIFVCGDQIRKGAALNAIQIAEMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14810			semialdehyde dehydrogenase fam...		Lus10013239 [exp]	0	1
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015130 [exp]	1.7	0.8072
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	9.5	0.7981
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	14.8	0.7826
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	22.2	0.7569
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	25.5	0.7597
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10032043 [exp]	25.7	0.7753
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	25.9	0.7844
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	27.6	0.7920
AT3G23940			dehydratase family (.1.2)		Lus10033370 [exp]	31.1	0.7903
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	32.6	0.7778

Compare expression of checked genes

Lus10013239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.