Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14720 451 / 3e-160 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 447 / 2e-158 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G32170 377 / 7e-131 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 341 / 1e-116 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G10550 257 / 2e-84 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 241 / 4e-78 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 225 / 4e-72 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT3G25050 211 / 2e-66 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT2G36870 209 / 2e-65 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT5G13870 207 / 4e-65 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030760 [exp] 650 / 0 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029000 [exp] 536 / 0 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 371 / 2e-128 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 310 / 8e-105 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10029165 [exp] 253 / 2e-82 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 252 / 4e-82 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10041341 [exp] 215 / 8e-68 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 212 / 7e-67 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 209 / 1e-65 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102300 [exp] 479 / 2e-171 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 479 / 3e-171 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 387 / 5e-135 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 374 / 1e-129 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 321 / 1e-109 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 257 / 4e-84 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 227 / 1e-72 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.009G006600 [exp] 214 / 9e-68 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.016G098600 [exp] 210 / 4e-66 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.006G122900 [exp] 208 / 2e-65 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10013240 pacid=23166666 polypeptide=Lus10013240 locus=Lus10013240.g ID=Lus10013240.BGIv1.0 annot-version=v1.0 ATGGAAATGGGTAGCAGCTCTGTATTATTGGGTTGTTTCCTAGCTGTTCTGCTTGTTTCCGCTTCTGGGTTCCACCATGGAAACTTGGCTATTGTTTCGT TTGATGAAGGGTACACCCAGCTTTTTGGGGAAGACAATCTGGTTGTTCACAAGGATGGAAACGCTGTCCACTTGATGCTTGATGAAAGAACTGGGTCTGG ATTTGTGTCTCAGGAGCTTTACTCACACGGCTACTTCAGCGCTTCGATTAAGCTCCCAGCTGATTACACAGCTGGAGTTGTGGTTGCTTTCTATATGTCT AATGGCGACACGTACGAGAAGAACCACGATGAGATTGACTTTGAGTTCTTGGGGAACATCAGGGGCAAAGATTGGAGGATTCAGACGAACATATATGGTA ATGGAAGCACAAGCTCAGGCAGAGAAGAGAGATACAGCCTCTGGTTTGATCCTTCTGATGATTTCCATCGCTATTCAATCCTCTGGACTGATTCCCACAT CATATTCTACGTGGATGATGTCCCAGTTCGAGAAGTGGTGAGAACCGAATCGATGGGGGGAGACTTCCCGTCGAAGCCGATGTCTCTGTACGCGACGATA TGGGACGGATCGACATGGGCGACAAACGGAGGGAAGTACAAGGTGAATTACAACTACGCCCCTTACACGTCGGAATTCGAGCAATTCGTCCTTCACGGAT GTTCTGTTGATCCGACGGAGCACACTGCATCGCACTGTGACGAAACATATGAAGCCTTGTCGAAGTCCGAGTTCATCTCGACCCCGCAGAGGAGCAGGAT GGACGGGTTCAGGACCAAGTACATGACGTACTCGTACTGCTACGATCGCATTCGGTACAATGTCCCCTTGCCGGAATGCGTGATCAATCCCTCGGAGGCT CAGAGGCTGAAGTCGTTCGATCCGGTCACTTTCGGTGGAGGTAGGGCCCGACGACACGGGAGGAGGCACCACCGGAAGGCAGTCCATGGTGAGGAGGCCA TGTCTATGTGA
AA sequence Show only first row Show all	>Lus10013240 pacid=23166666 polypeptide=Lus10013240 locus=Lus10013240.g ID=Lus10013240.BGIv1.0 annot-version=v1.0 MEMGSSSVLLGCFLAVLLVSASGFHHGNLAIVSFDEGYTQLFGEDNLVVHKDGNAVHLMLDERTGSGFVSQELYSHGYFSASIKLPADYTAGVVVAFYMS NGDTYEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSSGREERYSLWFDPSDDFHRYSILWTDSHIIFYVDDVPVREVVRTESMGGDFPSKPMSLYATI WDGSTWATNGGKYKVNYNYAPYTSEFEQFVLHGCSVDPTEHTASHCDETYEALSKSEFISTPQRSRMDGFRTKYMTYSYCYDRIRYNVPLPECVINPSEA QRLKSFDPVTFGGGRARRHGRRHHRKAVHGEEAMSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	0	1
AT4G21865			unknown protein		Lus10023724 [exp]	1.4	0.8845
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	1.7	0.8565
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10025772 [exp]	3.5	0.8388
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	5.5	0.8459
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	5.7	0.8556
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10029747 [exp]	6.5	0.8372
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10042133 [exp]	6.9	0.8366
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018377 [exp]	7.2	0.8139
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	8.8	0.8248
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	10.5	0.8616

Compare expression of checked genes

Lus10013240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.