Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25220 367 / 9e-129 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 362 / 3e-127 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 358 / 2e-126 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 358 / 2e-126 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 358 / 2e-126 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 349 / 2e-122 Glutamine amidotransferase type 1 family protein (.1) AT2G28880 101 / 6e-24 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT3G27740 69 / 4e-13 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030761 [exp] 509 / 0 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10036525 [exp] 104 / 5e-25 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 103 / 1e-24 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10018639 [exp] 67 / 2e-12 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10039874 [exp] 66 / 8e-12 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138800 [exp] 407 / 6e-145 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 403 / 4e-143 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G221500 [exp] 100 / 8e-24 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.003G080900 [exp] 71 / 7e-14 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 70 / 2e-13 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.003G128200 [exp] 42 / 0.0003 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10013241 pacid=23166675 polypeptide=Lus10013241 locus=Lus10013241.g ID=Lus10013241.BGIv1.0 annot-version=v1.0 ATGGCTGCAAATTTGGTCTCACGAGCTTCGTTAATCCAGTCCAAACCCTCAATATCATTCAAAAACCAGCAGACTCATAGTCTCCTCCTCCCTCAGCAGC TCTCTGTGCCGTCAAATTTTGGGACAAAGGGAAATGGATTGGCGGTGAGATGTTCGATTGCTGTCCCTGAAGCTCCTTCAAGGATTGGTGATTCAAATGG GAAAGGGGCGAAATCCCCTGTCGTTGTGATTGACAATTATGACAGTTTCACTTACAATCTTTGTCAGTATATGGGAGAGTTGGGATGCGAATTTGAGGTC TACCGGAATGATGAGTTAACCGTTGAAGAGTTGAAAAGGAAAAAGCCTAGAGGTGTGCTGATATCTCCAGGACCAGGGGCGCCCAAGGATTCTGGAATAT CGTTGCAGACAGTTTTGGAGCTTGGACCAATTGTGCCCTTGTTTGGTGTGTGTATGGGTTTGCAGTGCATTGGCGAGGCATTTGGTGGAAAGATCGTGCG TTCTCCATTTGGGGTCATGCATGGGAAAAGTTCACCGGTGTATTATGATGAGAAAGGAAAAGGCTTGTTCACTGGGTTACCGAACCCATTCAAAGCTGGT AGATATCACAGCCTTGTAATTGACCGAGACACCTTCCTGATTGATGAACTAGAGATCACTGCATGGACTGAGGATGGGTTGATTATGGCTGCCCGTCACA AGAAGTACAAATATCTACAGGGAGTGCAGTTTCATCCTGAAAGCATTATAACCTCCGAAGGAAAGATCATCGTCCAGAACTTCCTCAAAATGGTCGAGGA GAAAGAGGCAGCCGACTCGAACAACAGCTGA
AA sequence Show only first row Show all	>Lus10013241 pacid=23166675 polypeptide=Lus10013241 locus=Lus10013241.g ID=Lus10013241.BGIv1.0 annot-version=v1.0 MAANLVSRASLIQSKPSISFKNQQTHSLLLPQQLSVPSNFGTKGNGLAVRCSIAVPEAPSRIGDSNGKGAKSPVVVIDNYDSFTYNLCQYMGELGCEFEV YRNDELTVEELKRKKPRGVLISPGPGAPKDSGISLQTVLELGPIVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVYYDEKGKGLFTGLPNPFKAG RYHSLVIDRDTFLIDELEITAWTEDGLIMAARHKKYKYLQGVQFHPESIITSEGKIIVQNFLKMVEEKEAADSNNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10013241 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10037792 [exp]	4.0	0.7685
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	19.9	0.7009
					Lus10017606 [exp]	30.7	0.7425
					Lus10034388 [exp]	32.4	0.7431
AT3G15760			unknown protein		Lus10005715 [exp]	34.0	0.7400
AT2G41000			Chaperone DnaJ-domain superfam...		Lus10004491 [exp]	42.8	0.6978
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	60.4	0.7255
AT2G42005			Transmembrane amino acid trans...		Lus10013835 [exp]	62.0	0.7230
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	70.0	0.6449
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10011009 [exp]	76.2	0.6585

Compare expression of checked genes

Lus10013241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.