Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01818 212 / 6e-68 PLATZ transcription factor family protein (.1) AT3G60670 116 / 9e-31 PLATZ transcription factor family protein (.1) AT2G12646 114 / 8e-30 PLATZ transcription factor family protein (.1) AT4G17900 110 / 8e-29 PLATZ transcription factor family protein (.1.2) AT1G31040 110 / 2e-28 PLATZ transcription factor family protein (.1) AT2G27930 103 / 2e-26 PLATZ transcription factor family protein (.1) AT5G46710 103 / 5e-26 PLATZ transcription factor family protein (.1) AT1G21000 102 / 2e-25 PLATZ transcription factor family protein (.1.2) AT1G43000 100 / 7e-25 PLATZ transcription factor family protein (.1) AT1G32700 99 / 2e-24 PLATZ transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030763 [exp] 439 / 1e-155 AT2G01818 202 / 3e-64 PLATZ transcription factor family protein (.1) Lus10028998 [exp] 260 / 3e-86 AT2G01818 180 / 2e-56 PLATZ transcription factor family protein (.1) Lus10003680 [exp] 257 / 4e-85 AT2G01818 183 / 1e-57 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 121 / 1e-32 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 118 / 3e-31 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10027735 [exp] 112 / 2e-29 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10008814 [exp] 110 / 6e-28 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10020337 [exp] 109 / 1e-27 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10039989 [exp] 109 / 2e-27 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137300 [exp] 229 / 9e-75 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 221 / 1e-70 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 130 / 6e-36 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 125 / 3e-34 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 117 / 3e-31 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 115 / 3e-30 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 114 / 1e-29 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 112 / 1e-29 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 111 / 3e-29 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 109 / 1e-28 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10013242 pacid=23166600 polypeptide=Lus10013242 locus=Lus10013242.g ID=Lus10013242.BGIv1.0 annot-version=v1.0 ATGAAGAGCGGAGAAGGGATACAATTTGTTTACCTTTCGATAGGGAGGAGAAATGAAGCTTCTGGTTCAGTTGAAACGAACTCCCAGAAGCAGCTAATCA CTGGCGGTTGTGTTGCTGTTTACGCTGAGAGAAGGGATTCGATTAATGGGGAAGCTGCTGAATTTGAAATTAGAGGAGGAGGAAGAAGAAGAGGTTTCAG TCAGTTGGGGGGATTCCTGAAAACAGTGCTGAACAAACTGACTGCAACGAGGGAGACTGACACCCAACATCACACGGTAGGGTGCGGATTGTACGATTTA AAGGGCGGCGACGATCGGAGAAGAAGGCAGTGGGTGGAGACTCTACTGAACAGCGAGTTCTTCGGCGGGTGCGAGAGCCACAGAGAGCTGAGGAAGAACG AGAGGAACGTCTTCTGTCTCGATTGCGACGTCGGATTCTGCAAGCATTGCTCCAAATCCGATTCGTGCTTCCACCGCCATCTCCAAATTTGCAAGTACGT TTATCAGGACGTAATCCGCCTCCAGGACATCCAGAAGTATCTCGACTGTTCTCGAATTCAGACGTATAAGATAAATGGAGAAAAAGCGGTGCATTTGAAC CCGAGACCTATGTTGAAAGATGCGAAGCCGTCGACTAAGGCCAAGTCTGGAGCAGCTTGTATCATTTGTGCAAGATACTTACAGGATTTGCCTAATCGAT TCTGCTCCATTGCTTGCAAGGTGTCTGGAGGTGGATCGTGTATACTTGAAGGCCAGACTGCTCCGTTGTCGGAGAACGAAGCTCCCATAACGCCGTTCAA GTCAACGAACGTTGGCGGCTGTGAATACGATGACGGGTCAGCATTAACGGAAACTGAGTCCGACGGAGAAGGAGAAGCAAGGGGGACGGAATGGTTAACA CCGTCACCGTTACTGACGGGAAATTGGAGGAGACAATCTCACCAAAGAAAAGGGGTTCCGTTTAGATCACCCTTTTGTTAA
AA sequence Show only first row Show all	>Lus10013242 pacid=23166600 polypeptide=Lus10013242 locus=Lus10013242.g ID=Lus10013242.BGIv1.0 annot-version=v1.0 MKSGEGIQFVYLSIGRRNEASGSVETNSQKQLITGGCVAVYAERRDSINGEAAEFEIRGGGRRRGFSQLGGFLKTVLNKLTATRETDTQHHTVGCGLYDL KGGDDRRRRQWVETLLNSEFFGGCESHRELRKNERNVFCLDCDVGFCKHCSKSDSCFHRHLQICKYVYQDVIRLQDIQKYLDCSRIQTYKINGEKAVHLN PRPMLKDAKPSTKAKSGAACIICARYLQDLPNRFCSIACKVSGGGSCILEGQTAPLSENEAPITPFKSTNVGGCEYDDGSALTETESDGEGEARGTEWLT PSPLLTGNWRRQSHQRKGVPFRSPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01818			PLATZ transcription factor fam...		Lus10013242 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10005231 [exp]	8.2	0.7043
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10025738 [exp]	8.4	0.6783
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10010176 [exp]	14.4	0.6650
AT5G44710			unknown protein		Lus10001221 [exp]	23.0	0.6024
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	46.5	0.5800
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	54.2	0.5932
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	83.2	0.5411
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	92.3	0.5506
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	96.1	0.5532
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	104.3	0.5327

Compare expression of checked genes

Lus10013242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.