Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 662 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 636 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 587 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 580 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 579 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 558 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 556 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 545 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 529 / 2e-176 S-locus lectin protein kinase family protein (.1.2) AT1G11350 510 / 2e-169 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030768 [exp] 1323 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 1313 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 1303 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 1294 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 1278 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1271 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10025512 [exp] 1031 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 893 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 841 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 818 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 801 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 774 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 772 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 766 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 756 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 677 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 667 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 664 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 624 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10013244 pacid=23166650 polypeptide=Lus10013244 locus=Lus10013244.g ID=Lus10013244.BGIv1.0 annot-version=v1.0 ATGGATGCACGAATAATGATTCTGCTCCCTCTTCTTACTCTTCTCTTACATGGTCAAACCTCTGCATCATCAAATGATACTACTATACATGCTAACAGAT CAATTAAGGATGGCGAGCTTATCATCTCCAAAGGTGGCAACTTTGCTCTTGGCTTTTTCAACCCTGGCAGCTCAACCTTCAGATACCTTGGTATATGGTA CCACAACAAGCCAGGCCAAACTGTGTTGTGGGTAGCTAACAGGAACACCCCCATCAACGGCACTTCAGGAATCTTCACCAACGACGGATATGGAAACCTT TTGCTCTACAGCAGCATCCAAAACCAAGAGGTTCCCATATGGTCTACAAACGTTTCGAGAGCCTTCCCCTGTTCAGCTCAACTATTGGATTCAGGAAATC TGGTGTTGGTCCAACAAGGTACAGCAAGTAACAATAAATCATTACTTATGTGGCAAAGCTTTGAGCATCCTACGGATACCTTTTTACCGGGTATGAAAAT CGGCATGGATCTAGAAACAGGTTTGAACGTGTTCCCGACATCTTGGAGATCAAGAGATGATCCAGGAACTGGTGATTTTTCGGTTAAGCTCAACCCGAAT GGCTCGCCTCAGATCTTTCTGTATAAAGGTACAAATCCCCTTTGGAGGAGTGTCCCATGGCCATGGAAATTACCTCATCGTTTATACAATGATTCTTTTG TTAATAATGAAGATGGGATATGGTACTCGTTTGCTCCTTATGATGCTTCAACTGTGTTGATGCTTGTGATCGACAATTCGGGAACAGCAAGGGCAGTGAT GTGGGACGAAGCAGGTGGGATATGGAAAGAGTTCTATGTGATTTCGCACCAGAAATGTGATATATATGGCTATTGTGGTGCTTATGGCAAGTGTGACCCT AGCTCCACTTTTCTGTCAGAATGTATTTGCTTACCCGGTTATGAACCGAAGTCGCTTTTCGGAGATGGAAATGACGGGTGTGCCAGGAAGCGATCCAAAT CCTCTATTTGTGGGAAGGGAGAAGGTTTTGTGACAGTTAGAAATGTGAAGATTCCTGATACATCTGAAGCAGTTTGGATTGACCAGGGGCTGAACAAAGT GAACTGTGAAGATGAGTGTAGAAAGAATTGCTCCTGTTCTGCATATACTACTGGTAATATTGTTGGGAAAGGGACTGGTTGTTTGACATGGCATGGAGAA CTGATGGATACAGTACACGTCGCAACATCTGATCAAGAAATCTACATTCGTGTTGATGCTCTAGAACTAGCAAAGAAAGTGAAAGAAAGGCAGATCAGAA ACTTGTTTCATCCAAGCAAAGATTCGAGTTACTTACAGGATTCAATTGTGACAAAGGAAATGGAAAGAAGTAAAATGTACCCAGAATTACCATTCTTCAG CCTCGACGCGATACATGCTGCAACCAACAACTTTTCATCTGATAACAAACTTGGACAAGGGGGTTTTGGTTCTGTGTACAAGGGGAAATTTCCATCCGGG CAAATGGTTGCTGTGAAAAGATCGCCAAGAAATTCAAAGCAGGGACTAGAAGAGTTCAAAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACC TTGTGAAGCTGTATGGATGCTGCATTGAGAAAGAAGAGCAAATGTTGATTTATGAATACTTACCCTACAAGAGTTTGGATTCGCTTCTTTTTGTTGAGCA TCTGCCTGGTGGTAAGCCATTCTTAGGCTGGCGAAAGCGGTTTAATATCATTGTTGGTATTGCACGTGGAATCTTATATCTTCATCAAGACTCGAGGTTC AGAATAATCCATAGAGATTTAAAAACCAGCAATGTTCTTTTGGATGCGGAGCTTAATCCCAAAATATCCGATTTTGGGATGGCTAGAGTGCTAGAGGGGG ACCAAGTCAAAGGGGTGACTAGTAGAATCGGTGGAACTTTTGGCTACATGGCTCCAGAGTATGCATACTATGGGAAATTCTCAGTGAAATCGGATGTTTA TAGTTTCGGAGTAATGATACTGGAAATTGTGACTGGAAAGAGGATCAAAAGTCGGTTTACTACTCACGAGGAGGATCGTGCTTCCTTAAGCTTGATTGGA TACGTATGGGAGCTATGGAAAGCAGAGAGAGTGGGGGATATAGTGGAGCCATCACTTCAAGTGTCAACGAGTACCCTGAGATGCATCCACATCGGGCTGT CATGTCTCGAGGAAAATCCGGTAGATCGTCCAGATATGCAGACAGCGGTTGTCATGTTTAACAGCGAAACAGCCCCACTTCCTCCGCTAAAACGTCCCGC ATTCGTCTGCGCTGCAGAATCCAGAGTTGAGGTGAGGGTCGCAGAAGAATGCTCGATAAACGAGATTACACTTTCAGACATTCTTACTCGCTGA
AA sequence Show only first row Show all	>Lus10013244 pacid=23166650 polypeptide=Lus10013244 locus=Lus10013244.g ID=Lus10013244.BGIv1.0 annot-version=v1.0 MDARIMILLPLLTLLLHGQTSASSNDTTIHANRSIKDGELIISKGGNFALGFFNPGSSTFRYLGIWYHNKPGQTVLWVANRNTPINGTSGIFTNDGYGNL LLYSSIQNQEVPIWSTNVSRAFPCSAQLLDSGNLVLVQQGTASNNKSLLMWQSFEHPTDTFLPGMKIGMDLETGLNVFPTSWRSRDDPGTGDFSVKLNPN GSPQIFLYKGTNPLWRSVPWPWKLPHRLYNDSFVNNEDGIWYSFAPYDASTVLMLVIDNSGTARAVMWDEAGGIWKEFYVISHQKCDIYGYCGAYGKCDP SSTFLSECICLPGYEPKSLFGDGNDGCARKRSKSSICGKGEGFVTVRNVKIPDTSEAVWIDQGLNKVNCEDECRKNCSCSAYTTGNIVGKGTGCLTWHGE LMDTVHVATSDQEIYIRVDALELAKKVKERQIRNLFHPSKDSSYLQDSIVTKEMERSKMYPELPFFSLDAIHAATNNFSSDNKLGQGGFGSVYKGKFPSG QMVAVKRSPRNSKQGLEEFKSEVFLISKLQHRNLVKLYGCCIEKEEQMLIYEYLPYKSLDSLLFVEHLPGGKPFLGWRKRFNIIVGIARGILYLHQDSRF RIIHRDLKTSNVLLDAELNPKISDFGMARVLEGDQVKGVTSRIGGTFGYMAPEYAYYGKFSVKSDVYSFGVMILEIVTGKRIKSRFTTHEEDRASLSLIG YVWELWKAERVGDIVEPSLQVSTSTLRCIHIGLSCLEENPVDRPDMQTAVVMFNSETAPLPPLKRPAFVCAAESRVEVRVAEECSINEITLSDILTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	1.7	0.9603
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	2.8	0.9582
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	3.9	0.9467
AT3G53490			unknown protein		Lus10015041 [exp]	5.5	0.9365
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	5.9	0.9344
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	6.2	0.9266
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	6.3	0.9406
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	8.5	0.9269
AT1G70505			unknown protein		Lus10030895 [exp]	9.8	0.9240
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	9.9	0.9298

Compare expression of checked genes

Lus10013244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.