Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11300 941 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11340 678 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 653 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 595 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 588 / 0 ARK1 receptor kinase 1 (.1) AT4G21380 585 / 0 ARK3 receptor kinase 3 (.1) AT4G21390 578 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 567 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 558 / 5e-179 S-locus lectin protein kinase family protein (.1) AT1G11330 548 / 2e-174 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034637 [exp] 1411 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 1385 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 1360 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 1345 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 1342 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1293 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1093 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 903 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 892 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 816 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 800 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 770 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 766 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 766 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 760 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 704 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 694 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 692 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 651 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10013245 pacid=23166684 polypeptide=Lus10013245 locus=Lus10013245.g ID=Lus10013245.BGIv1.0 annot-version=v1.0 ATGGATGCACCAAGCTTCATTCTGCTTCCTCTTATTCTTACTCTTCTCTTCCATTCTAAAATCTATGCATCCTCAATTAATGACACTTTACACGCTAACA GATCAATCAAGGATGGGGAGCTTATCATCTCCAAAGGTGGCAACTTTGCTCTTGGATTTTTCAGCCCTGGTAGTTCAACCTACAGAAGATACCTTGGTAT CTGGTTTAATAACAAGCCAGGCCAAACTGTGGTGTGGGTAGCTAACAGGAACACCCCCATCAACGGCACCTCAGGAATCCTCATTAACGATGGATATGGA AACCTTTTGCTCTACAGCAGCATCCGAAACCAAGAGCTTCCCATATGGTCAACCAACGTTTCCAGAACTTTTCTATGTTCAGCTCAACTATTGGATTCAG GAAATCTGGTGTTGGTCCAGCAAGGTACCAATATCAAAACATCACTACTTCTGTGGCAAAGCTTTGATCATCCTACGGATACCTTGTTACCTGGTATGAA AATCGGCATCAATCTAGAAACAGGTTTGCACGTGTTCCTGACATCTTGGAGATCAGAAGATGATCCAGGAACCGGCGATTTCTCGTTGAAGCTCAATCCG AATGGCTTGCCTCAAATCTTTTTGTACCAGGGTGTGAATCCCCGTTGGCAGAGTGTCCCATGGCCATGGAAAGTAGACCATCGTTTATTCATTGATTCTT TTGTTAATAATGAGGTTGGGGTGTGGTTCTGGTTTGTTCCTCGTGATGCTTCGACTATGCACATGTCTGTGATTCTCAATTCAGGAACAGTGAGGGCCAT GATGTGGGATGGAGCAGGTGGGATATGGAAGGAGTTCAATACGATTTCGCATCAGAAGTGTGACATATACGGCCATTGTGGTGCTTATGGAATGTGTGAC TCTAGCTCCTCTTTTCTTTCTGAATGTATGTGCTTACCTGGTTATGAACCAAAGTCCCAAAGCAAGGTGCTTTTCCAAGATGGAAATGGCGGGTGTGTTA GGAAGCGATCGGAATCCTCTGTTTGTGGGAAGGGAGAAGGTTTTGTGAGAGTTAGAAATGTGAAGATTCCTGATACATCAGAAGCAGTATGGATTGACCA AGGGTTGAACAAAGTGAACTGTGAAGAAGAGTGTAGAAAGAATTGCTCCTGCTGTGCATATACTACTGCTAATATTGTTGGGAAAGGGACTGGTTGTTTG ACTTGGTATGGAGAACTGATGGATACAAGACACCTCCCGATACCTGATCAAGAAATCTACGTTCGTGTCGATACTCTCGAACTAGCTGAGTATGCAGTGC AATCTGCTGAGTTTGATGAGATTAGTTTTAAGCTAAATGTTCTCGCTCCATCAGTTTCTTCGGTTTTGATAGTCTGCATCTTGTTTGCCTACACACTGTT CAAGAGGTGGAGAAAGTGGAAAGCAAGGAAAGCAAAAGAAAGGCGGATCAGAAACTTGTTTCGTCCGAGCGAAGATTCGAGTTACTTGCAGAATTCTATA GTGGAAAAGGAAACGGAACGAAGTAAAGCGTACCCAGAATTACCATTTTTCAGCCTCGACGTGATACGTGCTGCAACCAACAACTTTTCATCTGATAACA AACTTGGAGAAGGGGGTTTTGGTTCTGTGTACAAGGGGAAATTTCCATCCGGGGAAATGGTAGCTGTAAAAAGAGCGCCAAGAAATTCAAGGCAGGGGCT AGAACAGTTTAAAAGTGAAGTGTTCTTAATTTCAAAATTGCAGCATAGGAACCTTGTGAAGCTCCACGGATGTTGCATTGAGGAAGTAGAGCAGATGTTG ATTTATGAATACTTACCTCATAAGAGTTTGGATTCACTTCTTTTTGTTGAGCATCAGACTGATAGCCCATTCTTAGACTGGGAAAAGCGATTTAATATCA TAGTTGGTATTGCTCGAGGGATCTTGTATCTTCATCAAGACTCGAGATTCAGAATAATCCACAGAGATCTAAAAATCAGCAATGTTCTCTTGGATGCGGA GCTTAAACCTAAAATATCCGATTTTGGAATGGCCAGAGTACTGGAGGGAAACCAAGTTAAAGGGATGACTAGTAAAATTGGTGGAACATATTTCGGGGCG ATGCTGCTGGAAATTGTGACTGGGAAGAAGATCAACAGTGGGTTTACTACTCACGAGGAGGATTGCGCTGCCTTAAACTTGATTGGATATGTATGGGAGC TATGGAAAGCAGGGAGAGTGGGCGATATAGTGGATCTATTACTTCAAGTGTCGACGAGTACCCTGAGATGCATCCACATCGGGCTGTCATGTCTCGAGGA AGATCCGGTAGATCGACCAGATATGCAGATAGTAGTTGTCATGTTGAACAGCGAAACAATCCCACTTCCTCCACTGAAACGTCCTGCATTCGTCTGTGGT GCAAACTCTACAGTTGAGGGTGGACATCCTTTTCCAATTTTGATTAGCTTGGAGGGTAGAAAGAGCTCCAGTCAAAGACTAATTTCAACTAAATATCAAA TGGATGCACAAAGGCTCATTCTGCTTCCGCTGCTTCTTACTCTTCTCTTCCATGATAAAGCCTCTGCATCATCAGATGACACTCTACATGCTAACAGATC AATCAACGATGGCGAGCTTATCATCTCCAAAGGAGGTAACTTTGCTCTTGGGTTCTTCAGCCCTGGTAATTCAACCTACAGAAGATATCTTGGTATTTGG TTTCATAACAAGCCAGGCCAAACTGTTGTGTGGGTGGCTAACAGGAACACCCCCATCAACGACACTTCAGGATTCCTCGTCAACGACGGATATGGAAACA TTTTGCTCTACAGCAGCACCCGAAACCAAGAGGTCCCGATATGGTCTACTAACGTCTCGAGAGCCTTTCCTTGTTTGGCTCAACTGTTGGATTCAGGAAA TCTAGTGTTGGTCCTACAAGGTAGTACATCAAGTAACAATACATCACTACTTGTGTGGCAAAGCTTTGATCATCCTACGGATACCTTTTTACCCGGTATG AAACTCGGCATCAATCTAGAAACAGGTTTGGACATGTTCCTGACATCTTGGAGATCAGAAGACGATCCAGGAACCGGCGATTTCTCGTTTAAGCTCAACC CGAATGGCTCGCCTCAGTTCTTTCTGTACCAGGGTATGAATCCCCGTTGGCGGAGTATCCCATGGCCATGGACAGTAGACCATCCTTTATACGTTGATTC TTTTGTTAATAATGAAGTTGGGATGTGGTACTCGTATGCTCCTCGTGATGCTTCGACTGTGTTCATGTATGTGATCCATAATTCGGGAACAGTGAAAGCA GTGGTATGGGACGAAGGCGGTGGGATATGGAAGGAGTTCTATACGATTTTGCATCAAAAGTGTGATATATACGGCTATTGTGGTGCTTACGGAAAGTGTG ACCCTGGCTCCTCTTTTCTGTCAGAATGCATTTGCTTACCTGGTTATGAACATCCAATCTCCCAAAGCAAGGTGCTTTCCGAAGATGGAAATCGCGGGTG TGTCAGGAAGCGATCAGAGTCCTCACTTTGTGCGAAGGGAGAGGGTTTTGTGAGAGTTAGAAATGTGAAGATTCCGGATGCATCAAAAGCAGTTTGGGTA GACCAAGGGTTGAACGAAGTGAATTGTGAAGATGAGTGTAGAAAGGATTGCTCCTGCACTGCATATACTACTCCTAATATTGTTGCGAAAGGGACTGGTT GTTTGACATGGCATGGAAAATTGATGGATACGGTAGACTTCCCGACACCTGATCAAGAAATCTATGTTCGTGTTGATGCTCTAGAACTAGCTGAGTATGC AGTGCAATCTGATGAGCTTAGTTTCAAGCTAAGCGTTCTCGTTCCATCAGTTACTTCCGTTTGCATTGTCTGCATCTTGTTTGCCTACACACTGTTGAAG AGGTGGAGAAAGCGGAAAGCAAGGAAAGCAACAGAAAGGCGGATCAGAAACTTGTTTCGTCCGAGCGAGGATTCGAGTTACTTGCAGGATTCTATAGTGA CAAAGGAAATGGAGCGAAGTAAAATGTATCCAGAATTACCAGTTTTTAGCCTCGACGTGATACGTGCTGCAACTAACAACTTTTCGTCTGATAACAAACT TGGACAAGGGGGTTTTGGCTCTGTGTACAAGGGGAAATTTCCAACTGGGGAAGAGATTGCTGTAAAAAGACCGTCAAAAAATTCAAGACAGGGGGTAGAA CAGTTCAAAAGTGAAGTATTCTTGATCTCGAAATTGCAGCATAGGAACTTGGTGAAGCTCTATGGATGCTGCATTGAGAAAGAAGAGCAGATGTTGATTT ATGAGTACTTACCTTATAAGAGTTTGGATTCACTTCTTTTCGTTGAGCATCAGCTTGGAAGCAACCTATTCTTAGATTGGGGAAAGCGGTTTAATATCAT TATTGGTATTGCACGTGGGATCTTATATCTTCATCAAGATTCGAGGTTCAGAATAATCCACAGAGATTTAAAAATCAGCAACGTTCTCTTAGATGCGGAG TTTAATCCCAAAATATCTGATTTTGGGATGGCTAGAATACTGGAGGGGAGCCAAGTCGAAGGGATGACTCGTAGAATTGGTGGAACATATGGCTATATGG CTCCAGAGTATGCTTATTGTGGAAAGTTTTCAGTGAAATCGGACGTTTATAGTTTTGGAGTGATGTTGTTTGAAATTGTGACCGGGAAGAAGATCAAAAG TGGGTTTGCTACTCACGAGGAGGATCATGCTGCCTTAAGCTTAATTGGATACGTATGGGAGCTATGGAAAGCAGAGAGAGTGGGGGATATAGTGGATGCA TCACTTCAACTATCAATTAGTACCATGAGATGCATCCACATCGGGCTGTTATGTCTCGAGGAAGAACCAGTAGAGCGACCAGATATGCAGACAGTGGTTG TGATGTTGAATAGCGAAACAACCCCGCTTCCTCTGCCGAAACGTCCTGCATTTGTCTGTGGAGCAAAGTCCGGAGTTGAGGTGAGGGTGGAAGAAGAATG CTCAATAAACGAGTTTACATTTTCAGACACTCTTACTCGATGA
AA sequence Show only first row Show all	>Lus10013245 pacid=23166684 polypeptide=Lus10013245 locus=Lus10013245.g ID=Lus10013245.BGIv1.0 annot-version=v1.0 MDAPSFILLPLILTLLFHSKIYASSINDTLHANRSIKDGELIISKGGNFALGFFSPGSSTYRRYLGIWFNNKPGQTVVWVANRNTPINGTSGILINDGYG NLLLYSSIRNQELPIWSTNVSRTFLCSAQLLDSGNLVLVQQGTNIKTSLLLWQSFDHPTDTLLPGMKIGINLETGLHVFLTSWRSEDDPGTGDFSLKLNP NGLPQIFLYQGVNPRWQSVPWPWKVDHRLFIDSFVNNEVGVWFWFVPRDASTMHMSVILNSGTVRAMMWDGAGGIWKEFNTISHQKCDIYGHCGAYGMCD SSSSFLSECMCLPGYEPKSQSKVLFQDGNGGCVRKRSESSVCGKGEGFVRVRNVKIPDTSEAVWIDQGLNKVNCEEECRKNCSCCAYTTANIVGKGTGCL TWYGELMDTRHLPIPDQEIYVRVDTLELAEYAVQSAEFDEISFKLNVLAPSVSSVLIVCILFAYTLFKRWRKWKARKAKERRIRNLFRPSEDSSYLQNSI VEKETERSKAYPELPFFSLDVIRAATNNFSSDNKLGEGGFGSVYKGKFPSGEMVAVKRAPRNSRQGLEQFKSEVFLISKLQHRNLVKLHGCCIEEVEQML IYEYLPHKSLDSLLFVEHQTDSPFLDWEKRFNIIVGIARGILYLHQDSRFRIIHRDLKISNVLLDAELKPKISDFGMARVLEGNQVKGMTSKIGGTYFGA MLLEIVTGKKINSGFTTHEEDCAALNLIGYVWELWKAGRVGDIVDLLLQVSTSTLRCIHIGLSCLEEDPVDRPDMQIVVVMLNSETIPLPPLKRPAFVCG ANSTVEGGHPFPILISLEGRKSSSQRLISTKYQMDAQRLILLPLLLTLLFHDKASASSDDTLHANRSINDGELIISKGGNFALGFFSPGNSTYRRYLGIW FHNKPGQTVVWVANRNTPINDTSGFLVNDGYGNILLYSSTRNQEVPIWSTNVSRAFPCLAQLLDSGNLVLVLQGSTSSNNTSLLVWQSFDHPTDTFLPGM KLGINLETGLDMFLTSWRSEDDPGTGDFSFKLNPNGSPQFFLYQGMNPRWRSIPWPWTVDHPLYVDSFVNNEVGMWYSYAPRDASTVFMYVIHNSGTVKA VVWDEGGGIWKEFYTILHQKCDIYGYCGAYGKCDPGSSFLSECICLPGYEHPISQSKVLSEDGNRGCVRKRSESSLCAKGEGFVRVRNVKIPDASKAVWV DQGLNEVNCEDECRKDCSCTAYTTPNIVAKGTGCLTWHGKLMDTVDFPTPDQEIYVRVDALELAEYAVQSDELSFKLSVLVPSVTSVCIVCILFAYTLLK RWRKRKARKATERRIRNLFRPSEDSSYLQDSIVTKEMERSKMYPELPVFSLDVIRAATNNFSSDNKLGQGGFGSVYKGKFPTGEEIAVKRPSKNSRQGVE QFKSEVFLISKLQHRNLVKLYGCCIEKEEQMLIYEYLPYKSLDSLLFVEHQLGSNLFLDWGKRFNIIIGIARGILYLHQDSRFRIIHRDLKISNVLLDAE FNPKISDFGMARILEGSQVEGMTRRIGGTYGYMAPEYAYCGKFSVKSDVYSFGVMLFEIVTGKKIKSGFATHEEDHAALSLIGYVWELWKAERVGDIVDA SLQLSISTMRCIHIGLLCLEEEPVERPDMQTVVVMLNSETTPLPLPKRPAFVCGAKSGVEVRVEEECSINEFTFSDTLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	1.4	0.9012
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	1.4	0.9036
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10009911 [exp]	2.8	0.8868
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	4.5	0.8747
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	4.9	0.8784
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	8.7	0.8416
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	9.3	0.8882
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	9.6	0.8227
					Lus10029851 [exp]	10.7	0.8443
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	12.2	0.8852

Compare expression of checked genes

Lus10013245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.