Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 672 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 647 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 590 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 585 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 575 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 569 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 565 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 548 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11350 528 / 1e-175 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61390 507 / 1e-167 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034637 [exp] 1400 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 1387 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1385 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030766 [exp] 1343 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 1323 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1308 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1091 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 898 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 862 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 814 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 805 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 798 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 796 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 785 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 782 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 708 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 692 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 689 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 654 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10013246 pacid=23166591 polypeptide=Lus10013246 locus=Lus10013246.g ID=Lus10013246.BGIv1.0 annot-version=v1.0 ATGGATGCACCAACCCTCATTCTTCTTTCTCTTATTCTTCTCTTCCATGATAAAACCTCTGCTTCATCAAATGACACTTTACATGCTAACATATTAATCC AGGATGGCGAGCTTATCTTATCAAAAGGTGGCAACTTTGCTCTTGGGTTTTTCAGCCCAGGTAATTCAACCTACAGAAGATACCTTGGTATCTGGTTCCA CAACAAGCCTGGCCAAACTGTGGTGTGGGTAGCTAACAGGAACACCCCCATCAACGACACTTCGGGAATCCTCACCGACGATGGATATGGAAACCTTTTG CTCTACAACAGCATCCGAAATCAAGAGCTTCCCATATGGTCAACCAACGTTTCCAGAACTTTTCTATGTTCAGCTCAACTATTGGATTCAGGAAATCTAG TGTTGGTCCAACAAGATACTTCAAGTAACAAAACATCACTTGTGTGGCAAAGCTTTGATCATCCTACAAATACCTTTTTAACAGGTATGAAAATAGGCAT GAATCTAGAAACAGGTTTGAACTTGTTCTTGACATCTTGGAGAACAGGAAATGATCCAGGAACTGGCGATTTCTCGTTTAAACTCAATCCTAATGGCTCG CCACAGTTCTTTTTGTACCATAGTACAAATCCCCGTTGGCGGGGTGTCCCATGGCCATGGACATTAGACCATCATTTATACAATGATTCTTTTGTTAATG ATGAAGTTGGGATATGGTACTCGTTTGTTCCTCGTGATGCTTCTACTGTGTTGATGCTTGTGATCCACAATTCAGGGACAGCGAGGGCTGTGATGTGGGA CGAAACTGATGGGATATGGAAGGAGTTCTATGTGATTTCGCCCCAGAAATGTGATATATACGGTCATTGTGGTGCTTATGGAAAGTGTGACCCTGGCTCC TCTTTTCTTTCAGAATGTATTTGCTTACCCGGTTATGAACCAAAGTCCCAAAGTAAGGTGCATTTAGGAGATGGAAATGGCGGGTGTGTCAGGAAACGAT CGGAATCCTCTGTTTGTGGGAAGGGAGAAGGTTTTGTGAGAGTTAGAAATGTGAAGATTCCTGATGCATCACAAGCAGTTTGGATTGACCAAGGGTTGAA CAAAGTGGACTGTGAAGATGAATGTAGAAAGAATTGCTCCTGCAGTGCATATACTACTGCTAAAATTCCCGACAAAGGGACTGGTTGTTTGACATGGCAT GGAGAACTAATGGATACAGTACACTTCGCGAGATCTAATCAAGAAATCTACATTCGTGTTGATGCCCTAGAACTAGCTGAGTATGAAGTGCAGTCTGGTG AGTTTGATGAGCTTCATTTTAAGCTAAGCGTTCTCGTTCCATCAGCTTCTTCGGTTTGGATTCTCTGCATCTTGTTTGCCTACACACTATTCAAGAGGTG GAGAAAGTGGAAAGCAAGGAGAGCAAAAGAAAGGCGAATCAGAAACTTGTTTCATCCGAGCGCTAATTCGAGTTACTTCCAGGATTCTATGGTCACAAAC GAAATGCAACGAAGTAAAATGTATCCAGAATTACCATTCTTCAGCCTCGACGCGATACGTGCTGCAACCAACAACTTTTCGTCTCATAACAAACTTGGAC AGGGGGGTTTTGGTTTTGTGTACAAGGGGAAATTTTCAACCGGGGAAGAGGTTGCTGTAAAAAGACCACCAAGAAATTCGAGGCAGGGGCTAGAACAGTT CAAAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACTTAGTGAAGCTTTATGGATGCTGCATTGAGAAAGAAGAGCAGATGTTGGTTTATGAG TACTTACCTTATAAGAGTTTGGATTCACTTCTCTTTGTTGAGCATCAGCTTGGAAGTAACCTATTCTTAGACTGGGGAAGGCGGTTCAATATCATTATTG GTATTGCACGTGGAATCTTATATCTTCATCAAGACTCGAGATTCAGAATAATCCACCGAGATCTCAAAACCAGCAATGTTCTCTTGGATGCGGAGCTTAA CCCTAAAATATCTGATTTTGGGATGGCTAGAGTACTGGAGGGGGACCAAGTTGAAGGCGTGACTCGAAGAATTGGCGGAACATATGGCTACATGGCTCCA GAGTATGCTTACCGTGGAAAGTTCTCGGTGAAATCAGACGTTTATAGTTTCGGAGTGATGCTTCTGGAAATTGTGACTGGGAAGAGGATCAAAAGTCGGT TTACTACTGACGAGCAGGATCGTGCTGCCTTAAGCTTGATTGGATATATATGGGAGCTATGGGAAGCGCAGAGAGTGGGGGACATAGTGGATCCATCACT TCAAGCGTCGACTAGTACCCAGAGATGCATCCACATCGGGCTGTCATGTCTCGAGGAAGACCCGGTAGAGCGACCAGATATGCAATTGGTGGTTAACATG TTGAACAACGAAACAACCCCACTTCCTCCACTGAAACTTCCTGCATTCGTCTTCCCTGCAGAGTCCAGTGTTGAGGGGAGGGTGGCAGAAGAATGCTCAA TAAACGAGATGACATTTTCAGACATTATTACTCGCTGA
AA sequence Show only first row Show all	>Lus10013246 pacid=23166591 polypeptide=Lus10013246 locus=Lus10013246.g ID=Lus10013246.BGIv1.0 annot-version=v1.0 MDAPTLILLSLILLFHDKTSASSNDTLHANILIQDGELILSKGGNFALGFFSPGNSTYRRYLGIWFHNKPGQTVVWVANRNTPINDTSGILTDDGYGNLL LYNSIRNQELPIWSTNVSRTFLCSAQLLDSGNLVLVQQDTSSNKTSLVWQSFDHPTNTFLTGMKIGMNLETGLNLFLTSWRTGNDPGTGDFSFKLNPNGS PQFFLYHSTNPRWRGVPWPWTLDHHLYNDSFVNDEVGIWYSFVPRDASTVLMLVIHNSGTARAVMWDETDGIWKEFYVISPQKCDIYGHCGAYGKCDPGS SFLSECICLPGYEPKSQSKVHLGDGNGGCVRKRSESSVCGKGEGFVRVRNVKIPDASQAVWIDQGLNKVDCEDECRKNCSCSAYTTAKIPDKGTGCLTWH GELMDTVHFARSNQEIYIRVDALELAEYEVQSGEFDELHFKLSVLVPSASSVWILCILFAYTLFKRWRKWKARRAKERRIRNLFHPSANSSYFQDSMVTN EMQRSKMYPELPFFSLDAIRAATNNFSSHNKLGQGGFGFVYKGKFSTGEEVAVKRPPRNSRQGLEQFKSEVFLISKLQHRNLVKLYGCCIEKEEQMLVYE YLPYKSLDSLLFVEHQLGSNLFLDWGRRFNIIIGIARGILYLHQDSRFRIIHRDLKTSNVLLDAELNPKISDFGMARVLEGDQVEGVTRRIGGTYGYMAP EYAYRGKFSVKSDVYSFGVMLLEIVTGKRIKSRFTTDEQDRAALSLIGYIWELWEAQRVGDIVDPSLQASTSTQRCIHIGLSCLEEDPVERPDMQLVVNM LNNETTPLPPLKLPAFVFPAESSVEGRVAEECSINEMTFSDIITR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10013246 [exp]	0	1
AT2G02410			unknown protein		Lus10026272 [exp]	4.4	0.7980
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	10.8	0.7763
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	14.8	0.7562
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	15.5	0.7131
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10018803 [exp]	18.3	0.7163
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	18.4	0.7464
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	20.0	0.7602
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	24.3	0.6997
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	25.7	0.7445
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	32.0	0.7208

Compare expression of checked genes

Lus10013246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.