Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 395 / 1e-128 S-locus lectin protein kinase family protein (.1) AT1G11410 372 / 4e-120 S-locus lectin protein kinase family protein (.1) AT4G27290 332 / 2e-105 S-locus lectin protein kinase family protein (.1) AT1G65800 330 / 3e-104 ARK2 receptor kinase 2 (.1) AT4G21380 324 / 6e-102 ARK3 receptor kinase 3 (.1) AT4G21390 321 / 1e-100 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 312 / 3e-97 S-locus lectin protein kinase family protein (.1) AT1G65790 298 / 3e-92 ARK1 receptor kinase 1 (.1) AT1G61380 297 / 8e-92 SD1-29 S-domain-1 29 (.1) AT1G61390 293 / 8e-92 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030766 [exp] 792 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 782 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 773 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 756 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 756 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 753 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 751 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 744 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 534 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 464 / 3e-156 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 441 / 4e-147 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 435 / 1e-144 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 424 / 1e-140 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 423 / 3e-140 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 421 / 2e-139 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 379 / 2e-122 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 370 / 3e-119 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G125000 [exp] 368 / 6e-119 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 367 / 2e-118 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10013247 pacid=23166616 polypeptide=Lus10013247 locus=Lus10013247.g ID=Lus10013247.BGIv1.0 annot-version=v1.0 ATGAATCTAGAAACAGGTTTGCAAGTGTTCCCGACATCTAGGAGATCAAGAGATGATCCAGGAACTGGTGATTTCTCGGTTAAGCTCAATCCGAATGGCT CCCCTCAGTTCTTTCTGTATCAAGGTACAAATCCCCGTTGGCGGAGTGTCCCGTGGCCATGGAAAGTAGACCATAGTTTATACAATGATTCTGTTGTTGA AGATGAGCTTGGGATATGGTATTCGTTTGCTCCTTATGATGCTTCGACTGAGTTGATGCTTGTGATCCACAATTCGGGAACAGTGAGGGCGGTGTTCTGG GACGAAGCCGGTGGGATGTGGAAGGAATTTGATACGGTTTCGCATCAGAAGTGTGACACATATGGCCATTGTAGTGCTTATGGAATGTGCGACTCTAGCG GCTCTTTTATTACAGAATGTATATGCTTGCCCGGTTATGAACCAAAGTCCCAAAGCAAGGTGCTTTTCGGAGATGGGTGTGTCAAGAAGCGATCGGAATC CTCTGTTTGTGGGAAGGGAGAAGGTTTTGTGAGAAATGTGAAGATTCCTGATGCATCACAAGCAGTTTGGATTGACCAAGGGTTGAACAAAGTGAACTGT GAAGATGGATGTAGAAAGAATTGCTCATGTTGTGCATATACTAGTGCTAATATGGTTGGGAAAGCGACTGGTTGTTTGATATGGCATGGAGAACTGATGG ATGCAGTACACCTCCCGATACCTGATCAAGAAATCTACATTCGGGTCGATGCTCTAGAACTAGGAGGCGGAGAAAGCGGAAAGGTAATCTATCATCTCTG GTATTCATCCTTTCTACTACTCAAACTGGTATTCATCCTTTCTTTCTTGTGCAGCAAGGAAAGAAACAGAAAGGCGGATCAGAAACTTGTTTCGTCCGAG CAGGATTCGAGTTACTTGCAGGATTCTATGGTGACAAAGGAAACAGAACGAAGTAAAACATACCCAGAATTACCATTTTTCAGCCTCGATGTGATACGTG CTGCGACCAACAACTTTTCATCAGATAACAAACTTGGAAAAGGGGGTTTTGGTTCTGTGTACAAGGGGATATTTCCATCCGGCGAAGAGGTTGCAGTAAA AAGACCGTCAAGAAATTCGAGGCAGGGGCTTGAACAGTTCAAAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACCTTGTGAAGCTGTATGGA TGCTGCATTGAGGAAGAAGAGCAGATGTTGATTTATGAATACTTACCGTACAAGATTGAGCATCTGCCTGGTGGGAAGCCATTCTTAGACTGGCGAAAGC GGTTTAATATCATTGTTGGTATTGCGCGTGGAATCTTATATCTTCATCGAGATTCGAGGTTCAGAATAATCCATAGAGATCTAAAAATCAGCAATGTTCT CTTGGATGCAGAGTTTAACCCCAAAGTATCTGATTTTGGGATGGCTAGCGTACTGGAGGGTGACCAAGTTGAAGGGGTGACTAGTAGAATCGGTGGAACT TAG
AA sequence Show only first row Show all	>Lus10013247 pacid=23166616 polypeptide=Lus10013247 locus=Lus10013247.g ID=Lus10013247.BGIv1.0 annot-version=v1.0 MNLETGLQVFPTSRRSRDDPGTGDFSVKLNPNGSPQFFLYQGTNPRWRSVPWPWKVDHSLYNDSVVEDELGIWYSFAPYDASTELMLVIHNSGTVRAVFW DEAGGMWKEFDTVSHQKCDTYGHCSAYGMCDSSGSFITECICLPGYEPKSQSKVLFGDGCVKKRSESSVCGKGEGFVRNVKIPDASQAVWIDQGLNKVNC EDGCRKNCSCCAYTSANMVGKATGCLIWHGELMDAVHLPIPDQEIYIRVDALELGGGESGKVIYHLWYSSFLLLKLVFILSFLCSKERNRKADQKLVSSE QDSSYLQDSMVTKETERSKTYPELPFFSLDVIRAATNNFSSDNKLGKGGFGSVYKGIFPSGEEVAVKRPSRNSRQGLEQFKSEVFLISKLQHRNLVKLYG CCIEEEEQMLIYEYLPYKIEHLPGGKPFLDWRKRFNIIVGIARGILYLHRDSRFRIIHRDLKISNVLLDAEFNPKVSDFGMASVLEGDQVEGVTSRIGGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	0	1
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	1.0	0.8161
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	11.0	0.7086
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	12.4	0.7772
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	12.6	0.6841
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10010448 [exp]	13.0	0.6980
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	15.5	0.7520
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	18.5	0.7097
AT1G05170			Galactosyltransferase family p...		Lus10002079 [exp]	19.1	0.7493
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005368 [exp]	19.6	0.6705
					Lus10042018 [exp]	23.9	0.6587

Compare expression of checked genes

Lus10013247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.