Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14740 433 / 8e-147 Protein of unknown function (DUF1423) (.1) AT3G63500 284 / 6e-88 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 224 / 5e-68 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 221 / 1e-66 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 52 / 5e-07 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 48 / 1e-05 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030770 [exp] 476 / 6e-170 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10016399 [exp] 292 / 3e-89 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10012327 [exp] 237 / 2e-72 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 236 / 4e-72 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 238 / 9e-70 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10030769 [exp] 204 / 3e-65 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10042869 [exp] 45 / 6e-05 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 45 / 0.0001 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 44 / 0.0001 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138100 [exp] 542 / 0 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.010G102600 [exp] 540 / 0 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 311 / 4e-96 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 303 / 4e-93 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 234 / 2e-71 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 232 / 8e-71 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G076500 [exp] 44 / 0.0003 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 43 / 0.0003 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 42 / 0.0009 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10013248 pacid=23166614 polypeptide=Lus10013248 locus=Lus10013248.g ID=Lus10013248.BGIv1.0 annot-version=v1.0 ATGGGGCTGGCGAGTTTTGTCTCCGGGAAAGCTCGTCTCCCTACCGAGGAGCTCATCGAGGTGTTTTTGTTCAAGAGGTGTAAGAACGTGAACTGCAAGA GTATATTACCCGTCGAGGACTGTGACTGTAAATTCTGCTCCGCAAATAACGGGTTTTGTAGCTCGTGCATGTGTCCCGTATGTATGAAGTTCGATTGCGC GAGCAATACGTGCAGTTGGGTCGGATGTGATGTTTGTTCGCATTGGTGTCATGCTGCTTGCGGGATACAGAAGAATCTCATCAGGCCAGGACCTACTTTG AAAGGTCCGCGGGGGACTAGCGAGATGCAGTTTCATTGTATCGCCTGTGATCATGCTTCGGAGATGTTTGGGTTCGTTAAAGATGTGTATACTTGCTGTG CTAAAGATTGGGGTTATGAGACTCTGTTGAAGGAGCTTGACTGTGTGAGGAAGATTTTCAAAGGGAGTGATGATTTTAAAGAGAAAGAGCTTCATACCAA GGCTGATGGGTTGATCTCCAAGCTTGAAGATAAACTTATATCTCCTTCAGATGCTTGCCACATCATTCTCAAGTTCTTCGACTATGCAGATCGGCTACCG GATTTTCCTACCGGCCCTTCTGCCAAAGAAATGATGCCTCGGAACACCGAACCCATCACTCGAAAAGAAGCAACTCCCCTTCCACAACATACTTCGCTCC CTCCAAGATACACCACCTACAACAACAACACGACCATCAACGACAACAACAGTGTCTCGGGCTCTTCAACGGGACGGCTAGGAACTGACCTCCACCGAAA GATGGAAGAGGAGTACCAACACTCGTTAGCAGCAAGGAAAGAAGGGTTCGAGAGCATTGAAAGCATCGTGCGGATCAAACAAGCCGAGGCAAGGATGTTC CAGAGCAAGGCAGACGAGGCGAGGAGGGAAGCTGAAGGGCTGAAGCGGATGATCCAGGTGAGGACCGATAAGTACGAGGAAGAGTACTCGCAGAAGCTGT CGAAGTTGTGCTTGCAGGAGACTGAGGAAAGGAGGAGGAAGAAGCTGGAGGAGCTGAAGAAGTTCGAGAACTCTCACTGCGATTACTTCAACATGAAGAT GAGGATGCAGGGCGAGATTGCTGGGTTGCTAGAGAGAATGGAGGCCACTAAACAACAGAGGGTTTAG
AA sequence Show only first row Show all	>Lus10013248 pacid=23166614 polypeptide=Lus10013248 locus=Lus10013248.g ID=Lus10013248.BGIv1.0 annot-version=v1.0 MGLASFVSGKARLPTEELIEVFLFKRCKNVNCKSILPVEDCDCKFCSANNGFCSSCMCPVCMKFDCASNTCSWVGCDVCSHWCHAACGIQKNLIRPGPTL KGPRGTSEMQFHCIACDHASEMFGFVKDVYTCCAKDWGYETLLKELDCVRKIFKGSDDFKEKELHTKADGLISKLEDKLISPSDACHIILKFFDYADRLP DFPTGPSAKEMMPRNTEPITRKEATPLPQHTSLPPRYTTYNNNTTINDNNSVSGSSTGRLGTDLHRKMEEEYQHSLAARKEGFESIESIVRIKQAEARMF QSKADEARREAEGLKRMIQVRTDKYEEEYSQKLSKLCLQETEERRRKKLEELKKFENSHCDYFNMKMRMQGEIAGLLERMEATKQQRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	2.4	0.8470
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	5.3	0.8423
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	7.2	0.8342
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	9.2	0.8301
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	10.5	0.8232
AT2G37480			unknown protein		Lus10024420 [exp]	11.1	0.8409
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10026286 [exp]	15.0	0.7775
					Lus10012564 [exp]	17.5	0.7922
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	18.5	0.8126
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	18.7	0.8215

Compare expression of checked genes

Lus10013248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.