Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31460 268 / 4e-92 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003683 [exp] 391 / 2e-140 AT4G31460 268 / 9e-92 Ribosomal L28 family (.1) Lus10028995 [exp] 382 / 4e-137 AT4G31460 259 / 1e-88 Ribosomal L28 family (.1) Lus10030771 [exp] 140 / 1e-40 AT1G14740 139 / 1e-36 Protein of unknown function (DUF1423) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006900 [exp] 287 / 2e-99 AT4G31460 268 / 8e-92 Ribosomal L28 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [flax] [poplar] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Lus10013249 pacid=23166644 polypeptide=Lus10013249 locus=Lus10013249.g ID=Lus10013249.BGIv1.0 annot-version=v1.0 ATGGCGTTCAGAGGGAGGCAGATGATGAATAAGGTCCTGAAGAAAGTAGGAGGCAAGAATTTGTCTCCTGCAATCAAGGAATCCCTGAAGAAATCCATAC CTGATAAAAAGGTGGTTATGGGCAGAGCTCAACGTGGTCTTTTTGCAGGGAAGCATATACAGTTCGGTAACCAAATCAGTGAAGATGGTGGCAACAAGAC AAGGAGAAACTGGAAGCCGAATGTCCAAGAGAAGAGGCTCTTCAGCTACATCCTCGACCGCCAAATTCGAGTCAAGGTCACTACTCACACCATCCGCTGC ATAGACAAAGCAGGAGGAATCGACGAGTATCTGCTCAGGACTCCCTACCAGAAGATGGACACGGAAATGGGGCTCTTCTGGAAGGCTAAAATCGAGAAGT CCTACGAAGACCTCGGGAAATCAGACGTGGTCTTCTTTTCTACCGAAGACGAGGAGAAGTTCGCGGAGGGCTTCAAAGATTTGAAACTATCCGAGCGTGA ATCTCGCAAGGAATTCAGAAGGCAAATGTACGCCGAGTTCGCGAAGCAGAAGCAGGCTTCAGGAGGGAAAGCTCGAGTCAGTTACATCCTGGCTACTGCA GATACCGTCCCTGGAAAGCTGATCGCTAACAGATGA
AA sequence Show only first row Show all	>Lus10013249 pacid=23166644 polypeptide=Lus10013249 locus=Lus10013249.g ID=Lus10013249.BGIv1.0 annot-version=v1.0 MAFRGRQMMNKVLKKVGGKNLSPAIKESLKKSIPDKKVVMGRAQRGLFAGKHIQFGNQISEDGGNKTRRNWKPNVQEKRLFSYILDRQIRVKVTTHTIRC IDKAGGIDEYLLRTPYQKMDTEMGLFWKAKIEKSYEDLGKSDVVFFSTEDEEKFAEGFKDLKLSERESRKEFRRQMYAEFAKQKQASGGKARVSYILATA DTVPGKLIANR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	0	1
AT3G47630			unknown protein		Lus10023597 [exp]	2.0	0.9168
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	4.1	0.9200
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10008977 [exp]	4.2	0.9025
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	4.9	0.9114
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	6.3	0.9069
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	7.7	0.9104
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	9.7	0.8885
AT5G38380			unknown protein		Lus10028477 [exp]	9.8	0.8512
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	10.5	0.8968
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	11.3	0.9014

Compare expression of checked genes

Lus10013249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.