Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01830 1236 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 936 / 0 AHK3 histidine kinase 3 (.1) AT5G35750 926 / 0 AHK2 histidine kinase 2 (.1) AT2G17820 160 / 9e-40 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 150 / 5e-37 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G66340 141 / 2e-34 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 120 / 2e-27 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 113 / 1e-25 ERS1 ethylene response sensor 1 (.1) AT3G04580 60 / 6e-09 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT4G18130 57 / 5e-08 PHYE phytochrome E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030772 [exp] 1954 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 1430 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 1418 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10015773 [exp] 912 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10012325 [exp] 905 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 895 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 719 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10026917 [exp] 158 / 3e-39 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10041891 [exp] 154 / 6e-38 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102900 [exp] 1373 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 1349 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 938 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 908 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 885 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.007G056400 [exp] 156 / 1e-38 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.018G011400 [exp] 152 / 2e-37 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 152 / 2e-37 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.005G111700 [exp] 150 / 9e-37 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.003G032300 [exp] 130 / 1e-30 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10013250 pacid=23166609 polypeptide=Lus10013250 locus=Lus10013250.g ID=Lus10013250.BGIv1.0 annot-version=v1.0 ATGGATCTGAAGCTGCAGCAGCAAATCAGCCATGTCCACAAGCGGCATTTGTCGGTGTATGAGAACCAGATGAACCAAATGAAGCACAAGAAGACCAAGT TCTCAGTTGGCCCTTACAGGCATTTGTTCCCCAGGGCGCTTCTACTTTGGGTGATGTTTGTTTGTTATCTTTCCATGCGGATATACAATCACTTGGACGA AGACCACAAGATGAGAAGAAAAGAATTGCTTGAAGGCATGTGTGAGCAGAGGGCTGGAATGTTACAGGACCAGTTTAATGTCAGTGTTAACCATGTCCAT GCCCTCGCCATTCTTGTCTCCTCTTTCCATTACTTCAAGAACCCCTCAGCCATTGACCAGGAAACTTTTGCTGAGTACACTGCAAGAACAGACTTTGAAC GGCCATTGCTGAGTGGGGTCGCCTATGCAGAAAGAGTACCAAATGCTCAAAGGATGGAGTTTGAGAAAAAGCATGGCTGGACAATTAAGACAATGGAAAG GAAAGCTTCACCAGTTAGAGATGAGTATGCACCAGTAACACTATCTCAAGAGACAGTCTCTTACATTCAGTCCATTGACATGATGTCTGGGGAGGAGGAT AGGGAGAATATTTTACGCTCTAGGTCTACCGGGAAGGCTGTCATTACAGGTCCTTTCAGGTTGCTTGGCTCGCATCATCTCGGTGTAGTGTTGACATTTC CCGTTTACAAGTCCAAGCTTCCTCCTTTTCCAACGGAAGCGCAGCGAATTGAAGCAACGGCAGGATATATTGGTGGTGCCTTTGATGTCGAGTCCCTAGT CGAGAACTTACTCAGGAAACTTAATGGGAATCAAGCAATCTTGGTGAATGTTTATGATGTGACCAACTCATCTGATCCTCTAGTCATGTACGGGGACAAA GATCAGGAAGGTGACGAATCTCTCGTGCTTGAAAACAAACTTGATTTCGGGGATCCATTTCGAAGACATAAGATGATATGCAGATATCATGAAAAGGCAC CGTGGTCAACGCTAGCAATCAGTGTGACGTCATCAATCTTTGTGTTAGGACTATTAGGAGGGTATACCTTTTATATTATTTTAACGCATTGTGTGCAAGT CGAGGATGATCGCGATCAAATGCATAATCTGAAAGGCCAAGCGGAAGCTGCTGATGTTGCTAAATCTCGATTTTTGGCTACGGTATCTCATGAAATCAGA ACTCCAATGAATGGCGTCCTTGGAATGCTCGCACTGTTATTGGACACAGCTCTTAGCTCAACTCAGAGAGATTATGCTCAAACTGCACAAGCCTGCGGCA AGGCGCTGATAGCGTTGATAAATGAGGTGCTAGACTGTGCCAAAATCGAAGCCGGAAAGTTAGACCTGGAAGCTGTCCCATTCGACCTTCGATCTATATT AGATGATGTCCTCTCGTTATTCTCCGAGAAGTCTAGGAACAAAGGCATTGAGCTCGCTGTATTTGTTTCCAATAATGTCCCTGACTTGGTTGTTGGGGAT CCTGGACGATTCAGACAGGTCATCACAAATCTCGTCGGAAACTCCATGAAGTTCACTGAACGAGGGCATATATTTGTAAGAGTTCATCTCGAGGAGCATG CCAAAACTGTGAAAGACTCAGAATCCGATCATAACATTCCAAATGGAGGATCTGATGAAAACGCGACCTTATCTGGTTCTCATCACTTCGAAACCTTAAG TGGCTCAGAGGCTGCTGATAAGTGGAGCAGCTGGGATACCTTCAAATACTTTGTTGCTGAAGAAGGATTCCGACTTGATTGTTGTTCATCGAACGGAAGG GCTTACGAAGCATCGAGGAATAACGTCACCTTGAGAGTATGCGTCGAAGATACAGGAATAGGAATCCCTATGTCAGCTCAAGATCGCGTCTTTATGCCCT TCATGCAGGTAGACAGTTCGACATCTAGAAATTACGGAGGGACTGGTATTGGATTGAGCATCAGCAAGTGCTTGGTTGAGCTCATGGACGGGGAGATAAA GTTTATAAGCCGGCCCCAGGTTGGAAGTACATTTACATTCACTGCTGTTCTACAGAGGTGCAGCAACAAAAGCACCACCATAAAGAGTTCTGAAAAACAA AATTCCGAAGATCTTCCTTCGAAGTTCCGAGGACTGAAAGCAGTAATAATAGATGGTAAACCGGTCAGAGCTGCTGTTACCCGATATCATTTGAAGAGGC TTGGTATTATCGCTGAAGTTGCGAATAAGGTTTGTATAAAAGGTTCCTCCTTTCAGCCAGACATTGTTCTCGTCGAGAAAGATTCATGGTTCTCTGGTGA GGATTGTGATTGGAAACAGCGTGGACATGTCTATAATAAGTCGCCGAAAATGATCCTGATAGCTACGAATATCAGCAGTTCGGAAATGGAGAAAGCGGAA GAAGCTGGCTTTGAAGACACTGTGATCATGAAGCCTTTGAGACCCAGCATGGTCGCTGCATGTCTACAGCAAGTTCTCGGAACAGGAAACACTAAATCGC ATGGAAATGGTGGGCCGTCTCATCTTCAGAGTCTACTACGTGGCAAGAGAATCCTCGTGGTGGATGACAATAGAGTGAACCGGAGAGTAGCTGCTGGTGC ATTGAAGAAATTCGGCGCTAATGCAGAATGCGCCGAGAGTGGCAAAGCTGCGCTCGAGTTGCTTCAGATACCCCATGGCTTTGATGCTTGCTTCATGGAT ATTCAGATGCCAGAAATGGACGGGTTTGAGGCAACTCGTCGAATCAGGCAGATGGAGAAGCAAGCGAACGAGAAACCTATCAGCAATGGATCGAGAATAG AAGAAGGAAGGGACGGGTGGCATTTGCCGGTATTAGCAATGACTGCTGATCTGATACATGCAACATTTGAGGAGTGCTTGAGTAGTGGGATGGACGGATA TGTGTCGAAGCCCTTTGAGGAACACAATCTGTACAAGGCAGTCGCAAAGTTCTTCGAAGAAAAACCCATCTCCAGCCGGTAA
AA sequence Show only first row Show all	>Lus10013250 pacid=23166609 polypeptide=Lus10013250 locus=Lus10013250.g ID=Lus10013250.BGIv1.0 annot-version=v1.0 MDLKLQQQISHVHKRHLSVYENQMNQMKHKKTKFSVGPYRHLFPRALLLWVMFVCYLSMRIYNHLDEDHKMRRKELLEGMCEQRAGMLQDQFNVSVNHVH ALAILVSSFHYFKNPSAIDQETFAEYTARTDFERPLLSGVAYAERVPNAQRMEFEKKHGWTIKTMERKASPVRDEYAPVTLSQETVSYIQSIDMMSGEED RENILRSRSTGKAVITGPFRLLGSHHLGVVLTFPVYKSKLPPFPTEAQRIEATAGYIGGAFDVESLVENLLRKLNGNQAILVNVYDVTNSSDPLVMYGDK DQEGDESLVLENKLDFGDPFRRHKMICRYHEKAPWSTLAISVTSSIFVLGLLGGYTFYIILTHCVQVEDDRDQMHNLKGQAEAADVAKSRFLATVSHEIR TPMNGVLGMLALLLDTALSSTQRDYAQTAQACGKALIALINEVLDCAKIEAGKLDLEAVPFDLRSILDDVLSLFSEKSRNKGIELAVFVSNNVPDLVVGD PGRFRQVITNLVGNSMKFTERGHIFVRVHLEEHAKTVKDSESDHNIPNGGSDENATLSGSHHFETLSGSEAADKWSSWDTFKYFVAEEGFRLDCCSSNGR AYEASRNNVTLRVCVEDTGIGIPMSAQDRVFMPFMQVDSSTSRNYGGTGIGLSISKCLVELMDGEIKFISRPQVGSTFTFTAVLQRCSNKSTTIKSSEKQ NSEDLPSKFRGLKAVIIDGKPVRAAVTRYHLKRLGIIAEVANKVCIKGSSFQPDIVLVEKDSWFSGEDCDWKQRGHVYNKSPKMILIATNISSSEMEKAE EAGFEDTVIMKPLRPSMVAACLQQVLGTGNTKSHGNGGPSHLQSLLRGKRILVVDDNRVNRRVAAGALKKFGANAECAESGKAALELLQIPHGFDACFMD IQMPEMDGFEATRRIRQMEKQANEKPISNGSRIEEGRDGWHLPVLAMTADLIHATFEECLSSGMDGYVSKPFEEHNLYKAVAKFFEEKPISSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10013250 [exp]	0	1
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10030772 [exp]	2.4	0.7621
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	9.5	0.7603
AT1G03610			Protein of unknown function (D...		Lus10040646 [exp]	20.9	0.7388
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	25.1	0.7033
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Lus10031506 [exp]	33.4	0.6929
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	37.2	0.7148
AT5G62960			unknown protein		Lus10042109 [exp]	69.0	0.7026
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	71.4	0.6828
AT5G23100			Protein of unknown function, D...		Lus10027241 [exp]	87.4	0.6405
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	106.5	0.6754

Compare expression of checked genes

Lus10013250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.