Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22260 599 / 0 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 268 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 261 / 4e-77 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 244 / 1e-70 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 107 / 1e-26 transcription factor-related (.1) ATMG00550 79 / 5e-17 ATMG00550.1, ORF160 unknown protein AT5G23610 50 / 7e-06 unknown protein AT1G32810 49 / 2e-05 RING/FYVE/PHD zinc finger superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030773 [exp] 1248 / 0 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 325 / 7e-101 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 316 / 3e-97 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 235 / 4e-67 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 218 / 4e-61 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 46 / 0.0001 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101300 [exp] 752 / 0 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 350 / 4e-110 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 307 / 2e-94 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 263 / 2e-77 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 262 / 2e-77 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 249 / 1e-72 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 249 / 2e-72 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G137000 [exp] 52 / 1e-06 AT5G23610 276 / 1e-86 unknown protein Potri.T012300 [exp] 48 / 2e-05 AT5G23610 257 / 2e-79 unknown protein Potri.011G152600 [exp] 48 / 3e-05 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10013251 pacid=23166657 polypeptide=Lus10013251 locus=Lus10013251.g ID=Lus10013251.BGIv1.0 annot-version=v1.0 ATGTCCAGGCAGCATTCGGACGTGAGTTGTTGTCCGAGGAAGAGGAAGAGAGGAGGAGGAGGAGGAGGAGGGGAGAGGGTGTTTTGGTTCAAGAGCTTCG GGCAGAAGGGCTACCCGATAGAGTTCGAAGGGTCGTCGTTTAGGCAGAACGTGGAGGCGTTGGTTGAGGTAGCGAATTCGGAGAGCAGCAGCAACGTTGT TTGGAATAATGGGGTTGGGAGTATGAGGAGTTGGTCGTTTCAACTTGAGGTCAATCGTCACCCTCCTTCACATGTATTCTTGTTTGTGTTGGAAGAGCTC ATTGAGAAGTCGGTTGATCAACATTGCAAGCATTGCCAATATACCGGATGGGGACGCCATTTGGTTTGCAACAAGAAGTATCACTTTGTGTTGCCATCCA AGAACACAATGGCTGCCTTCGTCGATTGCATTGATCTAATCAATAACTCTTCAACAACAACAAATAGTAATAGTAATAGCAATAGCAACATTAGCAAGGG TAAGCTGATCAACTTTGTGGAATTGCAAGACCACATCCTGTATGGTGTGTTTCACTCTAATGGGTTTGGCCATTTGCTTTCTCTTAATGGATTCGAATCC GGCTCCTCCCTCCTCTCCGGTCGCCAGATCATGACCTTCTGGGACCATCTTTGTTACTCGCTCAAAGCCAGAAAAGTGAGCTTGAATGACAACTCAACAA AGAGGAGCATGGAGTTAAGATTACTCCACGGCATTGCCTACAGAGCCCCATGGTTCGGTTCATGGGGATACAAATTCACCAAAGGAACCTACGGAGTAAA TCAGCCAATGTACGAGAAAGCAATAGAGGCACTCAGAGCAATCCCCTTGTGCATTCTAGTCCACTATTTAGGGAACTCGAACCACAACATCCCGATAATC TTCTCGAGGTACCAAATGCTGTCGGACCACTCCCTCACAACTCTCGGCGACATGTTCCACTTCATGCTAGATCTCCGAACCCGGCTGGCAGAGGAGAATC TACTAGATTCCTACACCGGTTCGGGTCTCTTTGTTGAGCAGACCTGCAGGTGGTCCCCGAAGAGGATCGAGATGGCGACTAGAGCCATAGTCGAGGCACT CAAGAGGGCGGAGTTTCGGTGGGTTTCGCGGCAGGAAGTTAGGGACGCGGCTCGTATATACATTGGAGACACGGGGCTTCTCGACTTTGTGCTTAAATCG CTCGGGAATCACATGGTTGGGAACTATTTGGTTCGAAGGTGCTTGAACCCTGTGACGAAAGTGCTCGAGTACTGCTTAGAGGACGTTTCGAACGTTGTTA TCCCAGTTCAGGAGAGTGGCTCAACCCCGATGCTTAATAACAACAACTCGAAAGTGAAGGCGAATCAGCAGCATTACAGGATAAGTAAGTCTCAACTGAT GAAGGATATGTTCTATCTGTACAAGTACATTCTCAAGGACTATAACATAATATCGAAGCAGCAGCAGAGCAATAACAACAACATCAACAGCAAATTGAAC ATGGGGATTCTGAATGTGATACCTACAGCGGTGAGAATCATCCTCGACGCCAAGTATTTCGCCAAGGAGTACCACGGCGATCAACCTTTACAAAGAGTCG GGCTTGGAACTGAAGATAAACTCAGCATTCATTGCACTGTCATGCTACAAAATACCAACAGCATTACCACAATGGAATTCTCACGAGATGATCTGCTGCC ACCGTTGGAGTGTGTTCAATTGAGGAGGAACGCGACATTCGAGGAGCTGAGGATGGAAGTGGAGAGGTGCTTCAGGGAGATGTACTGGGGGATGAAGAAC CTGAGCTTGGACAAAGTTGCAAACTTGGAATCAGCAAATGGGAAGGACTTGGTGTTTGGGCAAGTGGAGGTTGGTGGGGAAGTGATATTCCAAGGGAGCA GAATTGGAGCAAGGAATCATAATAATAACCAGAGTGAGGATGATTATACGATTGCCTATTACTACGAAGGAGGATTGAGCTGGAACAGGGTTGTGGTTTG CGGGTGTGGAGCTAAGGAAGATGATGGCGAGAGAATGGTGGCTTGTGACATTTGTGAGGTTTGGCAGCATACCAAGTGTGTTGGGATCCCTCAGCATCAG CAAATTCCGCAGATTTTCCTCTGTAAGAGGTGCGAGAACGAGATTGTGATCCTTCCGGCTTTCCCATAA
AA sequence Show only first row Show all	>Lus10013251 pacid=23166657 polypeptide=Lus10013251 locus=Lus10013251.g ID=Lus10013251.BGIv1.0 annot-version=v1.0 MSRQHSDVSCCPRKRKRGGGGGGGERVFWFKSFGQKGYPIEFEGSSFRQNVEALVEVANSESSSNVVWNNGVGSMRSWSFQLEVNRHPPSHVFLFVLEEL IEKSVDQHCKHCQYTGWGRHLVCNKKYHFVLPSKNTMAAFVDCIDLINNSSTTTNSNSNSNSNISKGKLINFVELQDHILYGVFHSNGFGHLLSLNGFES GSSLLSGRQIMTFWDHLCYSLKARKVSLNDNSTKRSMELRLLHGIAYRAPWFGSWGYKFTKGTYGVNQPMYEKAIEALRAIPLCILVHYLGNSNHNIPII FSRYQMLSDHSLTTLGDMFHFMLDLRTRLAEENLLDSYTGSGLFVEQTCRWSPKRIEMATRAIVEALKRAEFRWVSRQEVRDAARIYIGDTGLLDFVLKS LGNHMVGNYLVRRCLNPVTKVLEYCLEDVSNVVIPVQESGSTPMLNNNNSKVKANQQHYRISKSQLMKDMFYLYKYILKDYNIISKQQQSNNNNINSKLN MGILNVIPTAVRIILDAKYFAKEYHGDQPLQRVGLGTEDKLSIHCTVMLQNTNSITTMEFSRDDLLPPLECVQLRRNATFEELRMEVERCFREMYWGMKN LSLDKVANLESANGKDLVFGQVEVGGEVIFQGSRIGARNHNNNQSEDDYTIAYYYEGGLSWNRVVVCGCGAKEDDGERMVACDICEVWQHTKCVGIPQHQ QIPQIFLCKRCENEIVILPAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10013251 [exp]	0	1
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	2.0	0.8530
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	4.9	0.8517
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	4.9	0.8505
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	6.7	0.8458
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	8.5	0.8447
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	8.8	0.8116
					Lus10014515 [exp]	9.4	0.8488
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10009914 [exp]	11.0	0.8120
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	11.0	0.8144
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	11.2	0.8258

Compare expression of checked genes

Lus10013251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.