Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 371 / 4e-116 lectin protein kinase family protein (.1) AT2G19130 338 / 6e-104 S-locus lectin protein kinase family protein (.1) AT4G00340 321 / 2e-97 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 305 / 3e-95 Protein kinase superfamily protein (.1) AT4G32300 313 / 2e-94 SD2-5 S-domain-2 5 (.1) AT5G35370 291 / 5e-86 S-locus lectin protein kinase family protein (.1) AT4G18250 263 / 7e-76 receptor serine/threonine kinase, putative (.1) AT5G60900 258 / 7e-75 RLK1 receptor-like protein kinase 1 (.1) AT1G56140 256 / 1e-72 Leucine-rich repeat transmembrane protein kinase (.1) AT5G38280 249 / 3e-72 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 399 / 2e-126 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 380 / 6e-119 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10024343 [exp] 382 / 2e-118 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 372 / 3e-116 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 363 / 1e-112 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 347 / 2e-107 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 342 / 2e-105 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 325 / 3e-101 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10000249 [exp] 317 / 1e-95 AT4G32300 949 / 0.0 S-domain-2 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103300 [exp] 1096 / 0 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 389 / 6e-123 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 379 / 6e-119 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 378 / 7e-119 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 375 / 7e-118 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 374 / 2e-117 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 374 / 5e-117 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 372 / 1e-116 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 372 / 3e-116 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086300 [exp] 367 / 1e-114 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10013252 pacid=23166636 polypeptide=Lus10013252 locus=Lus10013252.g ID=Lus10013252.BGIv1.0 annot-version=v1.0 ATGGCGTCACCCTTCTTCTCCTTCCTGTTTGTTTTCATCTTCCTTCTCATCAACATCCTCCCTTCCTCTTCCCAAAACCTCACTTCTTTCTCCTTCTCCG ACTCCCCATGGCTCCCCATCTCCAACAAACTCCTCCTCTCTCCCAACTCCACCTTCGCCGCCGGCTTCCTCCGTTCTCCAACTTCCCCAAACCTCTATTC TTTCTCCGTCTGGTACAATAACTTACCCGGAGGGAAATCAAATTCAAGAACCGTCGTCTGGTCCTCTGCCTTCACGGCCAACGCTTCTCTCTCCGTCACC CGCTCCGGCCAGCTTGTTCTCCTCTCCAGCTCAGAAACTACTAACTTATTGCCAGGATCGCCCTCTCCGAGTTCGAATTCCAATTCGACTCAGCTAATTT TAGGCGACGACGGGAGTCTAGCGTTTGGTTCATGGACGAGCTTTCAATACCCTACCGATACATTCTTGCCCGGACAGAGCTTCAACGGAACTTCTCTCAC GTCAAGGAACGGGAACTTCAGCTTCTCGAATTCGACTTATCTGGTTTTCAACTCGTCAGATAGTTACTGGACCATCGACAGCGCCATAGCTGAGCTGAAC CTTGACGGTACCTTGCCTAAGGCGGCCGGGAGCAAGATCTACGTTGCCGACTACGGGTCAAACCGGACGCGAAGGTTGAAGCTCGACGACGACGGGAACT TGAGGGTTTATAGCTTCGATCCGATCGAGAACCGCTGGTTCATCGCGTGGCAGGCGATTCAGGAGCTCTGTAAAGTCAAAGGACTCTGCGGTGAAAACGC GATCTGCGTCAGTACTGATGGCTCCGATTCCACCTCATGCGTCTGTCCGCCGGGATTTGAACGACGATCGGAGAACTGCGTTAGGAAGATTCCTGTTAGG GGAAGCGGATTTAAGTTTCTCCAGCTCGATTACGTCAATTTCAGCAGCGGAATAGGATGGAACGGGAATCTTTGGGCGGCTCCAAATATCGACGTGTGCA GAAGGAATTGCTCAGATCTGGATAATTGTTTAGGGTTTCTCTTCAAGTACGACGGGACTGGCTACTGCTACCTCCACTTTGATATACTTAAGTACGGGCT ATGGTCTCCGGGGAACGAAGCCGTGATGTTTCTGAAAGTAGCCTCGTCGGAGACAGACGTGTCCAATTTCACCGGGATGACTAATCTGCTTCAGACGACT TGTCCCGTTCGGATCATCCTCCCTTCGCCTCCGGACCAATCGAATTCCACTGCAAGGAACATCGCGATCATCTGCACGCTGTTCGCGGCGGAGCTGATTT CAGGAGCGGCGTTTCTGTGGATTTTCTTGAAGAAATTTGTCAGATATCGGGATATGGCGAGGACTTTAGGTCTGGAATTGCTTCCAGCCGGTGGACCGAA GCGGTTCACGTACTCCGAGCTGAAATCGGCTACCAACGACTTCTCCAACGCGATCGGAAGAGGCGGATTCGGCGACGTGTACAGAGGTGAGCTGCCGGAT AAGCGAGTGGTGGCGGTGAAGTGCTTGAAGCCCGTCGCCGGCGGCGACGGGGAGTTCTGGGCGGAGGTGACTATCATTGCAAGGATGCATCATCTGAATC TGGTGAGGCTTTGGGGCTTTTGTGCGGAGAAAGGTCAGAGGATATTAGTTTATGAATATGTCCCTAATGGGTCACTGGATCGGTACCTATTCCCTGCCGG TCGAACCTTGAGTTCGCTCGATGTCGAACTGGACTTAGATGGGCCGACCAAGATTGACGGGAAAAAACCTATGTTAGATTGGAGTATTCGGTATCGAATC GCTCTCGGTATCGCAAGAGCAATGGCGTACCTACATGAGGAGTGCCTCGAATGGGTGCTCCACTGCGACATCAAACCGGAGAACATCCTATTGGGAGAGG ATTTCTGCCCCAAGATTGCCGATTTCGGGCTGGCGAAGCTAAGGAAGAAGGAGGACATGGTGAGCATGTCGAGGATACGAGGGACGAGAGGGTACATGGC GCCTGAGTGGATCAAGAGCGATCCAATCACATCGAAAGCAGATGTGTATAGCTTCGGGATGGTGTTGCTCGAAATTGTGACGGGGAGTAGGAATTTCGAG ATGCAAGGGTCGTTAATGGATAGTGAAGACTGGTATTTCCCTAGGTGGGCGTTTGACAAGGTGTTCAAGGAGAGGAAAGTGGAGGACATATTGGATAGGC AAGTGAAGCATTGTTACGACGGGAAGGTACATTTCGAGATGGTTGATCGAATGGTTAAGACAGCGATGTGGTGCCTTCAGGATCGGCCAGAGATGAGGCC GTCGATGGGGAAAGTGGCTAAGATGTTGGAAGGGACGGTGGAGATCACTGAGCCTACCAAGCCGACTATTTTTTTCTTGCAGGAATAA
AA sequence Show only first row Show all	>Lus10013252 pacid=23166636 polypeptide=Lus10013252 locus=Lus10013252.g ID=Lus10013252.BGIv1.0 annot-version=v1.0 MASPFFSFLFVFIFLLINILPSSSQNLTSFSFSDSPWLPISNKLLLSPNSTFAAGFLRSPTSPNLYSFSVWYNNLPGGKSNSRTVVWSSAFTANASLSVT RSGQLVLLSSSETTNLLPGSPSPSSNSNSTQLILGDDGSLAFGSWTSFQYPTDTFLPGQSFNGTSLTSRNGNFSFSNSTYLVFNSSDSYWTIDSAIAELN LDGTLPKAAGSKIYVADYGSNRTRRLKLDDDGNLRVYSFDPIENRWFIAWQAIQELCKVKGLCGENAICVSTDGSDSTSCVCPPGFERRSENCVRKIPVR GSGFKFLQLDYVNFSSGIGWNGNLWAAPNIDVCRRNCSDLDNCLGFLFKYDGTGYCYLHFDILKYGLWSPGNEAVMFLKVASSETDVSNFTGMTNLLQTT CPVRIILPSPPDQSNSTARNIAIICTLFAAELISGAAFLWIFLKKFVRYRDMARTLGLELLPAGGPKRFTYSELKSATNDFSNAIGRGGFGDVYRGELPD KRVVAVKCLKPVAGGDGEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYVPNGSLDRYLFPAGRTLSSLDVELDLDGPTKIDGKKPMLDWSIRYRI ALGIARAMAYLHEECLEWVLHCDIKPENILLGEDFCPKIADFGLAKLRKKEDMVSMSRIRGTRGYMAPEWIKSDPITSKADVYSFGMVLLEIVTGSRNFE MQGSLMDSEDWYFPRWAFDKVFKERKVEDILDRQVKHCYDGKVHFEMVDRMVKTAMWCLQDRPEMRPSMGKVAKMLEGTVEITEPTKPTIFFLQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	2.0	0.9092
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	2.4	0.8883
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	3.5	0.8670
AT4G25030			unknown protein		Lus10041415 [exp]	3.5	0.8829
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	3.5	0.8839
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	3.9	0.8743
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	4.5	0.8542
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	7.4	0.8481
AT1G29290			unknown protein		Lus10029256 [exp]	7.5	0.8670
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	8.5	0.8594

Compare expression of checked genes

Lus10013252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.