Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16340 2284 / 0 SPK1 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030776 [exp] 2588 / 0 AT4G16340 2660 / 0.0 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G024000 [exp] 2546 / 0 AT4G16340 2970 / 0.0 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1) Potri.004G000750 [exp] 158 / 1e-44 AT4G16340 155 / 9e-45 SPIKE1, guanyl-nucleotide exchange factors;GTPase binding;GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06920 [flax] [poplar] DHR-2 Dock homology region 2
Representative CDS sequence Show only first row Show all	>Lus10013253 pacid=23166581 polypeptide=Lus10013253 locus=Lus10013253.g ID=Lus10013253.BGIv1.0 annot-version=v1.0 ATGGATAGTAACAATACTAACAATGGCGGGCAGCGTTTCCGTAGATTGCCTCGTCAGTCCATTGCTCACCTCAGAATGGAGCCCGTGCTTGATGACAACT TGGAGCAGTGGCCGCATCTTAACGAGCTTGTTCAATGCTACAGCACCGACTGGGTGAAGGATGATCACAAGTATGGACACTACGAAAGTGTTGCCCCTGT ATCTTTCCAGAGCCAGATTTTCGAAGGCCCTGATACTGATGTCGAGACTGAGCTTCACCTTGCCAACTCAAGACAGGAAAAGGTTGATGAGCTTACTGAC GACGAACGTCCAAGTACTTCTGGAAGGCAAACTATGGAGCCTATATTTTCTGATAGATCGCAGTTGCATGTATCCAAGCACCTTGGTCTCTCTCCTCTAC CAGCTTATGAACCTGCTTTTGACTGGGAAAGTGAGCGGTCAATGATATTTGGCCAAAGGATCCCAGAAAGTCCAGTGAACCTCAATGGCAGCGGTCTGAA GATCTCTGTGAAAGTACTATCCCTATCATTCCCCGCCGGATTAGTAGAACCATTTCACGGCACACTATGCCTCTATAATAAGGAAAGAAGAGAGAAGCTG TCGGAGGACTTTTATTTTCATGTTGTACCAAATGACATGCAAGATGAACAAAGTAATCCTGAACGTCGTGGAATTTTCTATTTGGATGCTCCATCAGCTT CAGTTTGCTTGCTGGTCCAGCTTGAGAAGCCTGCCACAGAAGAAGGGGGTGTTAGTCCTTCCGCCTATTCACGAAAAGAACCTGTGCACTTGAGTGAGAG AGAGAAACAAAAGCTGCAAGTATGGTCACGGATTATGCCTTACAGAGAGGCCTTTGCCTGGGCCATTGTTCCATTATTCGATAGCAGTACCGGTGCAACT TCGGGGGGGCCTGCTTCTCCAAGCAGCCCACTCACCCAAAGTGTTTCTGGATCAGCTTCTCATGATCACGGATTTGAGCCTACTGCAAAAGTCATGCTAG ATGGGAAGTCTGGTTACTCTAACGGGAGCTCTGTCATTGTTGAAATCTCAAATTTGAATAAAGTTAAGGAGAGCTACACAGAGGACTCGCTTCAGGATCC TAAACGCAAGGTTCATAAACCTGTTAAAGGTGTACTCCGACTAGAAATTGAGAAGCACCAATTGGGCTACTCTGACATTGAAAATCTCTCAGAAAGCGGA AGTCTGGCAAATGATTGTGCTGATCTCGGGGACCGGGTTTCTGACTCTGTTTTGTCAAAATTGCCTGGTAATAGCTCTGATAGGCTTCAAAGTGGCAGCC TGAAGTGGAATGTGCACGATGGGAAGGAAGTTTCTGGAAATGGTTCAACTGCCAACCCAAATTCGAGTTTGTATGCTGATGATTTCCAAGCTTTTGACTT CCGCACGACAATGCGAAATGAGCCTTTCTTGCAGCTTTTCCATTGTCTGTATGTTTATCCTCTGACAGTTAGTCTGAGTCGGAAGAGAAATTTGTTTGTA CGCATTGAACTCAGGAAGGATGATCTGGATGTTCGTAGACCACCTCTTGAGGCAATGCATCCAAGGGAGCCGGGATCTGGGCCACAGAAATCGGTCCACA CACAGATTGCGGTTGGTACTAGAGTGGCCTCTTACCATGATGAAATAAAACTTTCCCTGCCTGCTATTTGGACACCTTCACATCACCTCTTATTCACTTT CCTCCATGTTGATCTTCAAACAAAACTAGAAGCTCCAAAGCCGGTGGTGATTGGATACAGTGTGCTTCCTTTGTCAACACATGCTCAGTTGCGGTCTGAA ATTTCTTTACCAATAATGAGAGAATTGGTTCCACATTATCTTCAAGACTTGGGAAAGGAGAGGCTGGAATATTTAGAAGATGGAAAACATGTTTTCAGAC TTCGTTTGCGGCTGTGTTCATCTTTATATCCCTTTAACGAGCGCATCAGAGATTTTTTCCTGGAATATGATAGGCACACTCTTCGAACAAGTCCACCCTG GGGCTCAGAACTTCTGGAGGCCATTAACAGTTTGAAGAACGTTGATTCCACTGCTTTGCTTCAGTTTCTTCACCCTATTCTAAATATGCTTCTAAATCTC ATAGGCAGTGGTGGAGAAACTCTCCAGGTTGCAGCCTTTCGAGCTATGGTTAACATTTTGACTAGAGTACAGCAAGAATCAGTCGATGATGGTGAAAGAA ACCGCTTTCTCGTCAACTATGTTGATTATGCTTTCGAGGACTTTGGTGGACGTCAGGCTCCCGTTTATCCAGGTCTGTCCACTGTATGGGGAAGCTTGGC TCGTAGTAAGGCCAAAGGTTATCGTGTTGGGCCAGTGTATGATGATGTTCTGGCAATGGCGTGGTTTTTCCTTGAGCTAATGATCAAGTCCCTTGCCTTT GAGCAAACTCGTCTTTTCTATCACAATCTTCCATTGGATGAAGACGTCCCTCCCATGCAATTGAAAGAAAGTGTATTCAGATGTGTGATGCAGCTGTACG ATTGTCTCCTCACAGAAGTGCACGAGCGTTGCAAAAAGGGTTTAAGCTTGGCAAAACGGCTGAACAGCAGTTTAGCCTTCTTCTGCTATGATCTTTTGTC CATAATTGAACCTCGCCAAGTTTTTGAGTTGGTCTCCTTGTACCTTGAAAAGTTTTCTGGTGTATGTCAACCAATGCTTCACGACTGCAAGCTTACATTT TTGCAAATCATATGTGATCATGACCTTTTTGTAGAAATGCCTGGGAGAGATCCTTCGGACAGAAATTATCTTTCCTCGATTCTAATACAAGAGATTTTCC TTTCTTGGGATCATGAGGATATGTCCCAACGGTCAAAGGCAGCTAGAATCTTGGTAGTCCTTTTGTGTAAGCATGAGTTTGATGCTCGGTACCAAAAGCC CGAGGATAAACTATACATCGCTCAGCTGTATTTCCCTTTGATTGGTCAGATCCTTGATGAGATGCCTGTTTTCTATAACCTCAGTTCTGTTGAGAAGCGT GAAGTTCTAATTGTTATTTTACAAATTGTACGAAATCTGGATGACACATCCCTTGTCAAGGCGTGGCAGCAAAGCATTGCACGAACTAGGCTATTCTTCA AACTAATGGAGGAAAGCCTTGTACTTTTTGAGCATAGGAAACCTGCTGACAGCATGCTGTTAGGTTCCAGCTCCCGCAGCCCTTCAGCTGATGCACCTCC TTCCCCAAAATATTCTGAGAGGCTTTCTCCTGCAATCAACAACTATTTATCAGAAGCATCACGTCAGGAAATCAGGCCTCAGGGTACGCCTGATAATGGT TTCTGGTCGCAGAGAGTGACTTCACAGTTGAGTTCTCCTAGCCAACCTTATTCCTTAAGAGAGGCGCTTGCCCAGGCACAGTCTTCAAGAATTGGTGCTT CAGCTCAAGCACTCAGGGAATCTCTGCACCCTATATTAAGACAGAAGTTGGAATTTTGGGAAGAAAATCTGAGTGCTGCTGTGAGTCTTCAGGTTCTTGA AACAGCTGAGAAGTTCTCCATGATGGCAGCATCCCGCAGCATCTCCACTGATTACGGGAAACTTGACTGTTTGTCAGCAACATTTATGAGTTTTTTCTCT CGTAATCAACCACTGGTCTTCTGGAAAGCACTATTCCCCGTCTTCAACACTGTCTTTGATCTTCATGGGGCGACATTAATGGCAAGGGAAAATGACCGCT TCTTAAAGCAAGTTGCATTCCACCTTCTTCGGCTTGGAGTTTTCAGAAATGAAAACATCAGGAAGAGGGCTGTTGTCGGTCTCCAGATACTCGTTAGGAG CTCTTTTTACTACATCATGCAAACAGCAAGGTTGAGGGTCATGCTGACGATCACATTGTCTGAGCTCATGTCTGATGTACAAGTTACACAGATGAGGTCT GATGGAACACTAGAAGAAAGCGGCGAAGCAAGGCGTTTACGCAAGTCATTAGAGGAAATGGCTGATGAATCTAAGAGCAATAACCTACTAAAGGAGTGCG GGCTTTCGGAATCTGCTCTAATGGCGATACCAGAGGGATTATCTGAGAATCGTTGGTCCTGGTCAGAAGTGAAACGCCTATCTGATAGTTTAATATTAGC CCTTGATGCTAGCCTGGACCATGCCCTTTTGGGTCCTGCAATGAACATGGATAGATATTCTGCTGCGGAGAGTTTCTATAAACTAGCGATGGCATTTGCC CCTGTTCCCGATCTTCATATTATGTGGTTACTGCACTTGTGTGATGCACATCAGGAAATGCAATCTTGGGCGGAAGCTGCACAAAGTGCAGTTGCTGTCG CTGGTATTGTGATGCAGGCTCTAGTAGCTAGAAAGGATGGTGTCTGGAGCAAAGATCACATTACTTCTCTACGAAAGATTTGCCCAATGGTGAGCTGCGA GATTAATCCCGAGGCATCTGCAGCTGAGGTAGAAGGATACGGTGCTTCAAAGCTGACAGTGGACTCTGCAGTAAAATACTTGCAGCTTGCAAATAAGCTA TTTTCTCAAGCTGAGCTCTTCCATTTCTGCGCTAGCATTCTGGAGCTCGTGATTCCAGTTTATAAAAGCAGGAGGGCATACGGGTGGGATTCTACGGCGA GAAATTTGAGAATATTCTCTCTTTCTACTGGAGGTGTTAAGGCTCGTGTGTTTGACCGATTTCTGTTCGACACTCCGTTCACAAAAAACGGCAAAACACA AGGTGGATTGGAAGACCAATGGAAGAGGCGAACCGTGCTTCAGACGGAAGGCTCATTCCCAGCTTTGGTGAACAGGCTCTTGGTGGTGAAATCAGAGTCC CTCGAGTTCTCTCCGGTTGAGAACGCGATTGGAATGATCGAAACCCGCACGGCTGCCTTGAGAAACGAGCTGGAGGAACCTCGAAGTTCAGACGGCGATC AGCTCCCCCGTTTGCAGAGTTTGCAGCGTATTCTTCAAGGCAGCGTCGCGGTTCAAGTAAACAGCGGGGTATTGAGTGTGTGCACGGCCTTCCTCTCCGG CGAGCCAGCAACGAGGCTGCGTTCGCAAGAGCTGCAGCAACTAATTGCTGCATTGCTCGAGTTCATGGCGGTTTGCAAGCGCGCGATTCGGGTACACTTC CGGTTGATAGGGGACGAAGATCAGGAGTTCCACACGCAGCTAGTGAACGGGTTCCAGTCTCTCACCGCCGAGCTGTCGCATTACATCCCGGCCATTCTCT CCGAGCTGTAA
AA sequence Show only first row Show all	>Lus10013253 pacid=23166581 polypeptide=Lus10013253 locus=Lus10013253.g ID=Lus10013253.BGIv1.0 annot-version=v1.0 MDSNNTNNGGQRFRRLPRQSIAHLRMEPVLDDNLEQWPHLNELVQCYSTDWVKDDHKYGHYESVAPVSFQSQIFEGPDTDVETELHLANSRQEKVDELTD DERPSTSGRQTMEPIFSDRSQLHVSKHLGLSPLPAYEPAFDWESERSMIFGQRIPESPVNLNGSGLKISVKVLSLSFPAGLVEPFHGTLCLYNKERREKL SEDFYFHVVPNDMQDEQSNPERRGIFYLDAPSASVCLLVQLEKPATEEGGVSPSAYSRKEPVHLSEREKQKLQVWSRIMPYREAFAWAIVPLFDSSTGAT SGGPASPSSPLTQSVSGSASHDHGFEPTAKVMLDGKSGYSNGSSVIVEISNLNKVKESYTEDSLQDPKRKVHKPVKGVLRLEIEKHQLGYSDIENLSESG SLANDCADLGDRVSDSVLSKLPGNSSDRLQSGSLKWNVHDGKEVSGNGSTANPNSSLYADDFQAFDFRTTMRNEPFLQLFHCLYVYPLTVSLSRKRNLFV RIELRKDDLDVRRPPLEAMHPREPGSGPQKSVHTQIAVGTRVASYHDEIKLSLPAIWTPSHHLLFTFLHVDLQTKLEAPKPVVIGYSVLPLSTHAQLRSE ISLPIMRELVPHYLQDLGKERLEYLEDGKHVFRLRLRLCSSLYPFNERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPILNMLLNL IGSGGETLQVAAFRAMVNILTRVQQESVDDGERNRFLVNYVDYAFEDFGGRQAPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELMIKSLAF EQTRLFYHNLPLDEDVPPMQLKESVFRCVMQLYDCLLTEVHERCKKGLSLAKRLNSSLAFFCYDLLSIIEPRQVFELVSLYLEKFSGVCQPMLHDCKLTF LQIICDHDLFVEMPGRDPSDRNYLSSILIQEIFLSWDHEDMSQRSKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYNLSSVEKR EVLIVILQIVRNLDDTSLVKAWQQSIARTRLFFKLMEESLVLFEHRKPADSMLLGSSSRSPSADAPPSPKYSERLSPAINNYLSEASRQEIRPQGTPDNG FWSQRVTSQLSSPSQPYSLREALAQAQSSRIGASAQALRESLHPILRQKLEFWEENLSAAVSLQVLETAEKFSMMAASRSISTDYGKLDCLSATFMSFFS RNQPLVFWKALFPVFNTVFDLHGATLMARENDRFLKQVAFHLLRLGVFRNENIRKRAVVGLQILVRSSFYYIMQTARLRVMLTITLSELMSDVQVTQMRS DGTLEESGEARRLRKSLEEMADESKSNNLLKECGLSESALMAIPEGLSENRWSWSEVKRLSDSLILALDASLDHALLGPAMNMDRYSAAESFYKLAMAFA PVPDLHIMWLLHLCDAHQEMQSWAEAAQSAVAVAGIVMQALVARKDGVWSKDHITSLRKICPMVSCEINPEASAAEVEGYGASKLTVDSAVKYLQLANKL FSQAELFHFCASILELVIPVYKSRRAYGWDSTARNLRIFSLSTGGVKARVFDRFLFDTPFTKNGKTQGGLEDQWKRRTVLQTEGSFPALVNRLLVVKSES LEFSPVENAIGMIETRTAALRNELEEPRSSDGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRAIRVHF RLIGDEDQEFHTQLVNGFQSLTAELSHYIPAILSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	0	1
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10030776 [exp]	1.0	0.9806
AT1G50710			unknown protein		Lus10032639 [exp]	5.8	0.8935
AT5G11560			catalytics (.1)		Lus10022143 [exp]	7.7	0.9320
AT1G27595			unknown protein		Lus10028229 [exp]	8.1	0.9254
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	8.4	0.9371
AT5G11560			catalytics (.1)		Lus10011690 [exp]	8.5	0.9130
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	8.7	0.9320
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	9.5	0.9276
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	10.6	0.9198
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	11.8	0.9145

Compare expression of checked genes

Lus10013253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.