Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02790 206 / 7e-59 IQD29 IQ-domain 29 (.1) AT1G14380 131 / 3e-32 IQD28 IQ-domain 28 (.1.2.3) AT1G18840 130 / 3e-32 IQD30 IQ-domain 30 (.1.2) AT1G74690 96 / 7e-21 IQD31 IQ-domain 31 (.1) AT1G19870 79 / 5e-15 IQD32 IQ-domain 32 (.1) AT4G14750 61 / 1e-09 IQD19 IQ-domain 19 (.1) AT3G51380 44 / 2e-05 IQD20 IQ-domain 20 (.1) AT5G13460 47 / 3e-05 IQD11 IQ-domain 11 (.1) AT3G16490 46 / 5e-05 IQD26 IQ-domain 26 (.1) AT4G00820 46 / 5e-05 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030784 [exp] 899 / 0 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10004263 [exp] 127 / 6e-31 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10042173 [exp] 124 / 5e-30 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10033167 [exp] 82 / 4e-16 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10006613 [exp] 59 / 7e-09 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 56 / 4e-08 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10014870 [exp] 55 / 2e-07 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10041188 [exp] 54 / 2e-07 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10010104 [exp] 48 / 2e-05 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 216 / 5e-63 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.012G069900 [exp] 206 / 6e-59 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 161 / 3e-43 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.005G236200 [exp] 78 / 9e-15 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.002G025200 [exp] 71 / 1e-12 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.008G156700 [exp] 59 / 6e-09 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.006G226600 [exp] 55 / 8e-08 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.010G082600 [exp] 54 / 1e-07 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.018G062001 [exp] 51 / 6e-07 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G190500 [exp] 52 / 7e-07 AT3G16490 293 / 5e-96 IQ-domain 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10013261 pacid=23166595 polypeptide=Lus10013261 locus=Lus10013261.g ID=Lus10013261.BGIv1.0 annot-version=v1.0 ATGGGGACATCTCCTGGGAAGTGGTTGAAGAGTTTAATCCGTGGGAAGAAGTCATCAAAGTCCAGTCTTTCGAAAGGAAAGGATGCGTTGAAACTGAACA ATGAGGAGGCACTGGTTTCCTCCAAAGTCCCTGCGTCAAATTGGATGAAAAGTCCTCAAACCCTCACGATTTCGCACCCAATTCCCGTTATTGGAGCTGG AAATGGAGTGAATTCGGCACATGCTGAAACTGCCGAGTCACGAAATGAGAAGGCTGATGTTTTGTGTGGCAAAGAGGAGGGTGGGAGTCCGGAACCAAGT GTGGATCAAGTTTCTGAGATAGTGAGGCTTGAGGATGCTGCAACGAAGGCTCAAGAGGACGTTACTTTATCTCTGGCTCCCGATAAAGTCGATAAGGACA GATGCATCGTAAGGTTGCAGGCAGTTATTCGTGGTCACTTGGTTAGGAGGCAAGCTGTTGCTACCCTAAACTGTGCTTGGGCAATCGTTAAGTTTCAAGC ACTAGTTCGGGGTCAAAAGGTTAGACGTTGTTCTAGTCTTCCGCTCAATCGCCAAGACACGATCAACCAAGCAAAACTTCGGGCTTTCAGTGCTGCTTTT GGAAATCCTAGAAGCTCGTTGAAGGGTCAGAATTTCGAGAATGCATTTGTCCGGAAGCTTTTAACTTCAACAGCTAGTGCAATGCCTCTAGCCCTCCAGT ACAGTCCTGGGGAACCGAACTCGGTTATGGAGTGGTTGAACCGTTGGACAAGATCATGCTTCTGGGAACATGTTTCAGAACAGAAGATGGTCCAACCGGA ATCAGAGTCCCTCATCAAGCAAGAGGGTTTAGAAAAAGTGGAAGCTCAACAAGGCAGGCAAAAGCAACCTGTGAAGAAATCATCTAGTGGGGCTAATGTT CCAAGTGGCATACATGGGAAGATATCGGAGTCCAGCAAACCGAAACGTAATCCCAGGAAGCCTTTGAAGCTTCCTGTAGATATGGGGAACAAGCTTCCAG AAACTGCATCGGTTAAGGCAAAGCAGGCTTCGAGAAAGGTTTCTGGTTCTGAAAAGGTTGAAGCTGATGGGGTTAGGCCAAAGAAAAATGTGAAGAAGAT ATCTGCTGATGTGGAGCAGGACAGTCAAATTTCTGCTGATGGGGCGAAGGATGTTGTTCCGTTGGCAGTTCCGAGTCCAGAAGTGAAGGATGTTGAGGAG CATTCACTTAATGGTGTGCTGAGTAATGTAAAAGAGAATAATATACTTCAGTTGGGACCAATTAATGATGAAGTTGGAGGGGTAAACGAGAATTCGAAAA CGAGCCAAAGAAGGGCATCATTGCCAGCCAATGTCGATCAGCAGGAGAATGGGGTACTTGGTACGCCGAAGCTTCCTAGCTATATGACACCAACACAATC TGCAAAGGCTAAGCTGAGAGGCACGGGATCTCCGGCCCTTCCTCAAGACGGAATCGAGAAAACTGGTAGCGCCACCACCACTAGACGACATTCACTTCCG TCTTCCATCAACGAGAAGTGTGTTTCCATGTCGCCTAGAGCTTACAGACAAGTCCATTCGGCTAGCAAAGGGTTTATCAGGAGCGACAAGTCCCTAACTT CTTCCAGAGATGGCAGTGGTAAATAA
AA sequence Show only first row Show all	>Lus10013261 pacid=23166595 polypeptide=Lus10013261 locus=Lus10013261.g ID=Lus10013261.BGIv1.0 annot-version=v1.0 MGTSPGKWLKSLIRGKKSSKSSLSKGKDALKLNNEEALVSSKVPASNWMKSPQTLTISHPIPVIGAGNGVNSAHAETAESRNEKADVLCGKEEGGSPEPS VDQVSEIVRLEDAATKAQEDVTLSLAPDKVDKDRCIVRLQAVIRGHLVRRQAVATLNCAWAIVKFQALVRGQKVRRCSSLPLNRQDTINQAKLRAFSAAF GNPRSSLKGQNFENAFVRKLLTSTASAMPLALQYSPGEPNSVMEWLNRWTRSCFWEHVSEQKMVQPESESLIKQEGLEKVEAQQGRQKQPVKKSSSGANV PSGIHGKISESSKPKRNPRKPLKLPVDMGNKLPETASVKAKQASRKVSGSEKVEADGVRPKKNVKKISADVEQDSQISADGAKDVVPLAVPSPEVKDVEE HSLNGVLSNVKENNILQLGPINDEVGGVNENSKTSQRRASLPANVDQQENGVLGTPKLPSYMTPTQSAKAKLRGTGSPALPQDGIEKTGSATTTRRHSLP SSINEKCVSMSPRAYRQVHSASKGFIRSDKSLTSSRDGSGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	0	1
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	1.0	0.9408
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	2.4	0.8953
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	4.2	0.8940
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	8.7	0.8613
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	11.2	0.8496
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	12.0	0.8141
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	12.0	0.8536
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	12.4	0.8218
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	12.6	0.8176
AT5G58300			Leucine-rich repeat protein ki...		Lus10021673 [exp]	14.0	0.7895

Compare expression of checked genes

Lus10013261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.