Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14390 569 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 526 / 4e-178 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 405 / 2e-130 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 192 / 7e-52 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 171 / 7e-45 Leucine-rich repeat protein kinase family protein (.1) AT5G61350 146 / 2e-36 Protein kinase superfamily protein (.1) AT2G21480 138 / 2e-33 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 138 / 2e-33 Malectin/receptor-like protein kinase family protein (.1) AT2G39360 135 / 7e-33 Protein kinase superfamily protein (.1) AT5G59700 133 / 6e-32 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030785 [exp] 1165 / 0 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005689 [exp] 373 / 4e-118 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 351 / 1e-109 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 313 / 1e-95 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034873 [exp] 294 / 2e-88 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029659 [exp] 253 / 1e-74 AT5G63410 584 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041589 [exp] 207 / 1e-57 AT5G14210 520 / 2e-176 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 196 / 9e-53 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 191 / 2e-51 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147700 [exp] 745 / 0 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G014300 [exp] 338 / 2e-105 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G333300 [exp] 310 / 1e-94 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 268 / 9e-79 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 251 / 2e-72 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G095600 [exp] 180 / 1e-47 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 178 / 6e-47 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G075000 [exp] 148 / 2e-36 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G061700 [exp] 144 / 1e-35 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 141 / 1e-34 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10013262 pacid=23166605 polypeptide=Lus10013262 locus=Lus10013262.g ID=Lus10013262.BGIv1.0 annot-version=v1.0 ATGCATTTCCTTCCCCTGCTTCTCCTTCTTCTTCAATTGCAGTTCACAACATCACAGCAGCTACCACGGAGCGAAACCAGAGTCCTTCTCCACATCCAGA AGCTTCTCGAATATCCTGCTCCACTCAATTCATGGACCAACTGGACAACAAACTTCTGCTACTCCCCTGTTTCTTCACCCTCGTTAAGGATCAGCTGCAC AAACAACCACGTCACAGAACTGACCATCGTCGGCAACCAAACCTCTCCGTCGCAGCTTCCCAACCCGATCCCTCCCGGAAATCAGTACGCCCTCTCCGGA GGATTCTCCATCGATTCGCTCTTCACTGATTTGACAAAGCTCCCCAATTTACAGAGCCTCTCGCTTGTCAAGCTCGGAATGTGGGGTCCGCTCCCTTCCC AGAAACTCGGCAGGTTCGGTTCGATTCGGGTTTTGAATCTCAGTTCCAATTTCATCTCCGGTCCGATTCCTTCAGGGATCGGTCCGAAAGGGTTGAAAAG TCTTGTCCTTGCTGATAATCTGATGAACGGGAGCGTTCCGGATCTAAGCGGGTTGGCTTCTTCTTTACAAGATTTGAATCTGAGCAGGAATCTTTTGAGA TCTCAGATTCCTTCAGGGTTTAAGAAGATGAACAGCCTTCAGAGATTGGATTTGTCAGGAAACAAGCTGATCGGACCGATTCCGTTTGCGATTTTCTCTC TGCCTTTGATTCAATCCGTTGACTTGAGTAGGAATCAGCTCAGCGGAACGGTTGCCAGCAAGATTTCTTGCAGCTCTCAGCTCCAGCTCATGGACATTTC CCATAACCTTTTGGTGGGCGGTCTCCCCACCTGCTCCGATTCTTCGAAGAGTCGGAGAGTGATCGTAGCTTCGTGGAACTGCTTGTCTGGTGGTGTGAAG ACTAAGCAGCAGCAGCATCCGTACTCTTTCTGTCATAAGGAAGCGTTGGCTGTTAAGCCACCAAACAAGGGTAAAAATGGTGGAAAGCAGAAATCTTCCA CCGTTGGACTTGGAGTCATAATTGGGATCGTTGGAGGAGCTTTGGGGCTGACCGTTGTTCTAGGGATCGTGATTTGTTTGATCGTCAGGAGATCGAACTA CGCAGATTTTCCGTCTGGTGATGATCGTAGGTTCGAGCTCTCCTTGGCTGACAAAATGTCCATTCGGAGCTCCGTCCAAACCTTCGAGTCCAGGAGGGTG CCTAAGACAATGAGATCGGCAGCCATCGGACTACCGTCATATCATAACTTCACGTTGGAAGAGATCGAAGACGCCACGAACGGATTTGACCCATTGAATT TCGTCGGAGGAGAAGAGAATCAGGGGCAGCTCTATAAAGGCTGCCTCGTCGACGGGCTGGGAGTTGTAGTAAAATGTGTGAAGCTGAAACACAAGAGCCT GCCTCAGAACATGATGCAACACATAGAAGTGCTGTCAAAGCTGAGGCATCTACATTTGGTCAGTGTTCTGGGGCACTGCATTGTCACTTTCCAGGATCAC CCCACCACAGTAGCGACTCTTTTCGTCGTTTTCGAGCACGTCACCAACGGGTCCCTCCTGGACTATATTACAGACAGAAGGAAGAAAGAGGTGCTGAAAT GGCCGCAAAGGATGGCGATTACGATGGGAGTCGCGAGGGGAATCCACTTCTTGCACACAGGAGTGGCGCCTGGGATTTACGGGAACGATTTGAAGATCGA AAATGTGCTGCTTGACGAAAGCCTCACCGCGAAACTCAGCAACTATACGCTTCCTGTGCCGGCCAAGGTTGGCGCCGAGAGTCCGTTGAAAGGGCAAGAC ATTCACAGTATCAACAGCTGCGAAAATCCAGAAAAGGAAGACGTATACCAGCTGGGAACGATCGTGCTTCAACTGATCACAGGTAAACAAGTGAGAACTT CGGGAGAAGTAGAAGAACTCAAGACGCAGCTGGAGAAGGGCTTGGCGGAGGGTCAATTAAAGCTGAGAGCTATGGCGGATCCTTCCACGAAGGGAACTTA CGCCTATGACTCGTTGAGAACTGCGGTAGAGATCACCATCAACTGCCTCTCGAAGGACCCCAGTAGCCGCCCTTCGATAGAAGATGTGTTGTGGAATTTG CAGTATTCGAGCCAAGTTCAGGAAGGATGGACAAGCAGCGGGAACCTAGGAACTTAA
AA sequence Show only first row Show all	>Lus10013262 pacid=23166605 polypeptide=Lus10013262 locus=Lus10013262.g ID=Lus10013262.BGIv1.0 annot-version=v1.0 MHFLPLLLLLLQLQFTTSQQLPRSETRVLLHIQKLLEYPAPLNSWTNWTTNFCYSPVSSPSLRISCTNNHVTELTIVGNQTSPSQLPNPIPPGNQYALSG GFSIDSLFTDLTKLPNLQSLSLVKLGMWGPLPSQKLGRFGSIRVLNLSSNFISGPIPSGIGPKGLKSLVLADNLMNGSVPDLSGLASSLQDLNLSRNLLR SQIPSGFKKMNSLQRLDLSGNKLIGPIPFAIFSLPLIQSVDLSRNQLSGTVASKISCSSQLQLMDISHNLLVGGLPTCSDSSKSRRVIVASWNCLSGGVK TKQQQHPYSFCHKEALAVKPPNKGKNGGKQKSSTVGLGVIIGIVGGALGLTVVLGIVICLIVRRSNYADFPSGDDRRFELSLADKMSIRSSVQTFESRRV PKTMRSAAIGLPSYHNFTLEEIEDATNGFDPLNFVGGEENQGQLYKGCLVDGLGVVVKCVKLKHKSLPQNMMQHIEVLSKLRHLHLVSVLGHCIVTFQDH PTTVATLFVVFEHVTNGSLLDYITDRRKKEVLKWPQRMAITMGVARGIHFLHTGVAPGIYGNDLKIENVLLDESLTAKLSNYTLPVPAKVGAESPLKGQD IHSINSCENPEKEDVYQLGTIVLQLITGKQVRTSGEVEELKTQLEKGLAEGQLKLRAMADPSTKGTYAYDSLRTAVEITINCLSKDPSSRPSIEDVLWNL QYSSQVQEGWTSSGNLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	0	1
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	5.2	0.8265
AT1G63980			D111/G-patch domain-containing...		Lus10032300 [exp]	13.3	0.8184
AT4G23020			unknown protein		Lus10029604 [exp]	21.2	0.7876
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	23.2	0.7741
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	41.6	0.8102
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	54.0	0.7427
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	61.3	0.7785
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	64.2	0.7556
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	101.9	0.7296
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	127.7	0.7784

Compare expression of checked genes

Lus10013262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.