Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02750 633 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 333 / 3e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 329 / 8e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 327 / 1e-101 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 314 / 1e-97 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 313 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31430 309 / 2e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18750 316 / 5e-97 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 309 / 3e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 311 / 5e-96 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030787 [exp] 1190 / 0 AT2G02750 633 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000073 [exp] 635 / 0 AT2G02750 370 / 8e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 334 / 2e-106 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 333 / 3e-106 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10009269 [exp] 326 / 5e-103 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 327 / 4e-102 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 328 / 8e-102 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 331 / 7e-100 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 319 / 1e-99 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088600 [exp] 352 / 1e-112 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G178200 [exp] 346 / 3e-109 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 342 / 2e-105 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 338 / 2e-105 AT3G22690 1050 / 0.0 unknown protein Potri.004G124400 [exp] 327 / 4e-103 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 328 / 5e-102 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 322 / 3e-100 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 322 / 6e-100 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 318 / 3e-98 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 318 / 3e-98 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013264 pacid=23166585 polypeptide=Lus10013264 locus=Lus10013264.g ID=Lus10013264.BGIv1.0 annot-version=v1.0 ATGCAGGGAAACCGCCAAGTAATCGAACTCGTCGCCGATGGGCTCTACAAGGAAGCCATTGCCCTTCACTTTCGGCAACATTCCGCATCACTTCCCGCCA CCCGGTTCACGTTCCCGCCTCTTCTCAAAGCATGCGTCAAGCTCAATTCACCCCTCCATGGCCAAATACTTCATTCCCAGCTCCTTAAAACGGGGTTCTA TCACCACACACATTCCGCCACAGCGCTGGCCAACATGTACATGAAGCTGAAATTTCCTTACGCAGACGCAGTCAAAGTGTTCGACGAAATGCATCACCGG AACTTGGCCTCGCTTAATGCCGCGATCTCTGCATTCTCGAGTAGTGGGGACTGCGAAAAGGCGTTTCTTCTGTTTCGAGAGGTCGGGGGTGCTGGGTTGG TGCCGAATTCTGTTACCGTGGCGAGTGTTTTGATTGGTTGTCGAAGTGGTGAAGTTTGTCGGCAGGTGCATTGCTGGGCGATCAAGTTGGGAGTGGATGG TGATGTCTATGTAGGAACGGTGATGGTAACTGTTTATAGTGGATGTGGAGAGATGTTGGTGGCAGGGAAATTGTTTGGAGAAATGCCTGATAAGAACGAG GTGAGCTACAATGCTTTGTTATCTGGGCTTCTGGAAAATGGTAAGCCAGATATGGTCTTGAACGTATTTAAGGATATGAGGGAGGGATTAAGTGAAAGGC CGAATTCGGTTACATTGATGTCTGTTCTTTCTGCTTGTTCTAGTCTTTCGTATCTTCAGTTTGGGAAGCAGGTTCATGGATTCATGGCTAAGACAATGGC GGTGGTACTAGATGTTAAACTTGGGACAGCCCTTGTTGACATGTATTGCAAATGCAGGTCTTGGAGATGGGCGTATGATGTTTTTAATGAACTGGGTGCT AATAATAGGAACTTGGTCACATGGAACTCGATGATTTCTGGTCTGATGTTGAATGGTGAAAGTGACAGTGCTGCTGAGTTGTTTGGGCTATTGGAATCCC AAGGGTTGGAACCTGATTCCGTAACGTGGAATTCGATGATCAGTGGGTTTGCTCAGTTGGATATGGCCAGTAAAGCTTTTCGTTTCTTCAAAAAGATGCA ATCTTCTGTAACTGTTCCCAGTTTGAAGTCTGTCACAAGTTTACTGCGAGCTTGTGCATCTTTGTTGGCTATGCAACATGGAAGAGAGGTACACGGGCAT GCTATCAGAACTGACCTTCATACGGATGAGTTTATGGCCACTGCTCTTATTGACCTGTATATGAAATGTGGCAACTTTTCGTGGGCAAGACGGATCTTTG ATGGATTTGTCGTGAAACCAAGTGACCCAGCATTTTGGAATGTCATGATATCAGGATATGGAGCAAACGGTAACAGTGAATCAGCATTCAAGTTTTTTTA TCAGATGCTAAAGGAAAAGGTGAAGCCAAATTCCGGCACTTTTACTGCTATTCTGTCTGTGTGTAGTCACACAGGACATGTAGACGAAGGATGGAAGGTT TTCAAAATTCTGACTGATGAACATAGCTTGAATCCCAAAGCAGAGCATTTTGGTTGCATGATTGACCTTCTGGGTCGATCTGGCAGGTTGGATGAAGCTA GTAAGCTATTGGAGGGTATTCAAGAGCCATCTACTTCAGTATTTGCGTCATTGCTTGGCGCTTGTAGGCATCATTTGCAGCCTGACCTTGGGGAACAAGT GGCTATGAAGCTTGTAGAGTTGGAACCAGATGATCCAACTCCTATTGTGATGCTCTCAAATATATATGCAGGTTTAGGAAGGTGGCAGGATGCAGAAAAA ATCAGAATGATACTAAACAGCAGAAAGCTGAAAAAAATTCCCGGTTAG
AA sequence Show only first row Show all	>Lus10013264 pacid=23166585 polypeptide=Lus10013264 locus=Lus10013264.g ID=Lus10013264.BGIv1.0 annot-version=v1.0 MQGNRQVIELVADGLYKEAIALHFRQHSASLPATRFTFPPLLKACVKLNSPLHGQILHSQLLKTGFYHHTHSATALANMYMKLKFPYADAVKVFDEMHHR NLASLNAAISAFSSSGDCEKAFLLFREVGGAGLVPNSVTVASVLIGCRSGEVCRQVHCWAIKLGVDGDVYVGTVMVTVYSGCGEMLVAGKLFGEMPDKNE VSYNALLSGLLENGKPDMVLNVFKDMREGLSERPNSVTLMSVLSACSSLSYLQFGKQVHGFMAKTMAVVLDVKLGTALVDMYCKCRSWRWAYDVFNELGA NNRNLVTWNSMISGLMLNGESDSAAELFGLLESQGLEPDSVTWNSMISGFAQLDMASKAFRFFKKMQSSVTVPSLKSVTSLLRACASLLAMQHGREVHGH AIRTDLHTDEFMATALIDLYMKCGNFSWARRIFDGFVVKPSDPAFWNVMISGYGANGNSESAFKFFYQMLKEKVKPNSGTFTAILSVCSHTGHVDEGWKV FKILTDEHSLNPKAEHFGCMIDLLGRSGRLDEASKLLEGIQEPSTSVFASLLGACRHHLQPDLGEQVAMKLVELEPDDPTPIVMLSNIYAGLGRWQDAEK IRMILNSRKLKKIPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	0	1
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	1.0	0.9212
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	2.4	0.9063
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	4.0	0.8856
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	4.2	0.8873
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	4.5	0.8785
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	5.8	0.8233
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	6.6	0.8639
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10018278 [exp]	7.5	0.8713
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	9.8	0.8533
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	12.7	0.8504

Compare expression of checked genes

Lus10013264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.