Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69800 392 / 3e-133 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) AT3G48530 189 / 2e-55 KING1 SNF1-related protein kinase regulatory subunit gamma 1 (.1) AT1G80090 52 / 7e-07 AtPV42b Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 45 / 9e-05 AtPV42a Cystathionine beta-synthase (CBS) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030788 [exp] 472 / 2e-165 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Lus10022458 [exp] 193 / 2e-56 AT3G48530 579 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10016763 [exp] 191 / 7e-56 AT3G48530 578 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10042308 [exp] 77 / 5e-15 AT3G48530 125 / 1e-31 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10026352 [exp] 77 / 7e-15 AT3G48530 127 / 4e-32 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Lus10029432 [exp] 47 / 2e-05 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10004227 [exp] 45 / 6e-05 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053600 [exp] 399 / 2e-136 AT1G69800 370 / 5e-125 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2) Potri.012G097000 [exp] 192 / 4e-56 AT3G48530 572 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.015G094700 [exp] 191 / 9e-56 AT3G48530 627 / 0.0 SNF1-related protein kinase regulatory subunit gamma 1 (.1) Potri.009G118700 [exp] 103 / 1e-23 AT3G48530 111 / 9e-27 SNF1-related protein kinase regulatory subunit gamma 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10013265 pacid=23166667 polypeptide=Lus10013265 locus=Lus10013265.g ID=Lus10013265.BGIv1.0 annot-version=v1.0 ATGTCAGAAGCCAAAGGGGACAAAGAGACGGAAAAAATCGCCAGCTATGATGCATATTTCGAAACAATACAATCCAGGAAGAAACTGCCACATTCATTGC AGGAGACCTTAACCGCTGCATTCTCTAGGATCCCGGCTTCATCCTTTCCGAAAGTCCCCGGTGGCAAAGATACAACGGTGAGCCATGCGGTTAAGGTTCT GTCCGAATGCAACATCATGAGTGCACCTGTTAGAAACCCGGATGCAGGAGATAGTCCGGACTGGAAAGATAGATACCTTGGAATCATCGATTATGCAGCG ATCGTTCTCTGGGTGCTCGAAAGTGCAGAGCTTGCTGCGGTAGCTTTGTCTGCAAGTACTGCTACCGCTGCTGGCATAGGGGCGGGAGCTGTCGGTGCCA TTGGAGCGGTAGCATTGGGCGTAACGGGCCCCGCTGCCATTGCTGGCCTATTATGGGTCGAAACGGCCCTCGCTGCTGTTGTGGGTTGGACACGAGCTGC GGTAGGTGCCGCTGTTGCTGGTGGTGTGGCAGCCGATCGAGGCATCGGGAAAGATGCCCCGACTGCAGTGGACAGCTTAGGCAATGACTTTTACAAAGTC ATTCTCGAAGAAGAACCCTTCAGATCAACCACTGTAAAGACAATTCTGAAGTCATACCGCTGGGCTCCCTTCCTCCCGGTTGCGACAGATGGCTCAATGT TGAGTGTCTTACTTTTACTCTCGAAATATAGGCTGAGAAACGTGCCTGTGATGGAGCCTGGCAATCCAGACGTGAAAAACTTCATCACACAATCTGCAGT AGTTCAGGGCCTGGAAGGATGCAAGGGAAGGGACTGGTTTGATTGTATAGCTGCATGTCCCCTTTCAGATTTAGGACTTCCTTTTATGTCTGCTGACAAG GTTATAAGCATACAGAGTGATGAACTCATCCTAGAAGCTTTCAAGCTGATGAGAGATAATGAAATCGGCGGGCTTCCTGTAGTGGAAGGGCCAAAAAAGA AGATTGTTGGAAACATAAGCATAAGGGACATAAGATTCTTGCTGCTGAAACGTGACCTATTCGACAATTTCAGGCAGCTGACTGTAAAGGATTTCATGAC GACCATCGCAACTCACGAGAACGGCAAAGTAATGCCGCCCATCACATGCAAGTTGGATGCAACTCTTGGCAGTGTGATTCACCATCTTGCTTCCAGATCA GTCCACAGGCTCTATGTAGTCGATGATAGCAAAGATGAAGGAGTCATCGGTGTAATAACACTTCGAGACGTGATATCATGTTTCATATACGAGCCACCGA ACCATTTTGACATCTACTTTGGTTTCTCAATCAAAGAAGTCCTCAACAAGTGA
AA sequence Show only first row Show all	>Lus10013265 pacid=23166667 polypeptide=Lus10013265 locus=Lus10013265.g ID=Lus10013265.BGIv1.0 annot-version=v1.0 MSEAKGDKETEKIASYDAYFETIQSRKKLPHSLQETLTAAFSRIPASSFPKVPGGKDTTVSHAVKVLSECNIMSAPVRNPDAGDSPDWKDRYLGIIDYAA IVLWVLESAELAAVALSASTATAAGIGAGAVGAIGAVALGVTGPAAIAGLLWVETALAAVVGWTRAAVGAAVAGGVAADRGIGKDAPTAVDSLGNDFYKV ILEEEPFRSTTVKTILKSYRWAPFLPVATDGSMLSVLLLLSKYRLRNVPVMEPGNPDVKNFITQSAVVQGLEGCKGRDWFDCIAACPLSDLGLPFMSADK VISIQSDELILEAFKLMRDNEIGGLPVVEGPKKKIVGNISIRDIRFLLLKRDLFDNFRQLTVKDFMTTIATHENGKVMPPITCKLDATLGSVIHHLASRS VHRLYVVDDSKDEGVIGVITLRDVISCFIYEPPNHFDIYFGFSIKEVLNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	1.0	0.9259
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	1.7	0.8917
					Lus10014515 [exp]	2.0	0.9116
					Lus10011017 [exp]	2.2	0.8738
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	2.4	0.8729
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	2.8	0.8811
AT3G13400		SKS13	SKU5 similar 13 (.1)		Lus10036492 [exp]	3.6	0.8384
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	4.2	0.8604
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	5.3	0.8642
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10027390 [exp]	5.5	0.8354

Compare expression of checked genes

Lus10013265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.