Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030789 [exp] 145 / 7e-46 ND / Lus10020770 [exp] 99 / 2e-25 AT1G06530 147 / 6e-42 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10007347 [exp] 91 / 1e-22 AT3G58840 148 / 3e-42 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10031394 [exp] 70 / 5e-15 AT1G06530 130 / 1e-35 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10010937 [exp] 55 / 1e-09 AT3G58840 140 / 3e-39 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060200 [exp] 52 / 2e-08 AT1G06530 91 / 5e-21 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Potri.005G201400 [exp] 45 / 2e-06 AT1G06530 144 / 8e-41 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013266 pacid=23166620 polypeptide=Lus10013266 locus=Lus10013266.g ID=Lus10013266.BGIv1.0 annot-version=v1.0 ATGAAGGTGAAACTGGAGGCGGCTAACGACAGGAAGGCCTATTCGGAGAAGAGATTGAGGGCGATGGAGAGGAATGCCGGGATTACTGAGAGAGATAAGG AGTTGGTTGAATATAAGAGGATCGCGGACGAATTGGAGAAGGAGTTGGCTGTTCGATCTGAAATGGAGGAGAAGTTGATCGTCTCTGGAAAAAGGAACAG AGAGATCGAAATGAAGATGGTGATGTTGCGGAAGAAGGCAGGGGAGTCTGAGAAGAGCATCGTTGAGATGAAACAGAGTGCTTTCGAAGTCGTTAATAAT GGCTTCAATCTTGACCATGGTGAAGATAGAGATTTCAATTTGCAGTTGCCGGTGGTGGTAATCGTTGCAGCTGCAGTTGCCTATCTCTTCTACGCAAGGA GACAGTGA
AA sequence Show only first row Show all	>Lus10013266 pacid=23166620 polypeptide=Lus10013266 locus=Lus10013266.g ID=Lus10013266.BGIv1.0 annot-version=v1.0 MKVKLEAANDRKAYSEKRLRAMERNAGITERDKELVEYKRIADELEKELAVRSEMEEKLIVSGKRNREIEMKMVMLRKKAGESEKSIVEMKQSAFEVVNN GFNLDHGEDRDFNLQLPVVVIVAAAVAYLFYARRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013266 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10013866 [exp]	4.5	0.7665
					Lus10041357 [exp]	6.3	0.7927
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	8.9	0.7910
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	13.4	0.7569
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	14.5	0.7771
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	25.5	0.7592
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	29.3	0.7632
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	30.7	0.6778
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	36.2	0.7599
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	52.9	0.7456

Compare expression of checked genes

Lus10013266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.