Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 237 / 4e-76 Pectate lyase family protein (.1) AT5G48900 219 / 9e-70 Pectin lyase-like superfamily protein (.1) AT3G07010 218 / 2e-69 Pectin lyase-like superfamily protein (.1) AT4G13710 218 / 6e-69 Pectin lyase-like superfamily protein (.1.2) AT1G14420 218 / 6e-69 AT59 Pectate lyase family protein (.1) AT4G24780 216 / 9e-69 Pectin lyase-like superfamily protein (.1.2) AT3G24670 217 / 1e-68 Pectin lyase-like superfamily protein (.1) AT1G67750 216 / 1e-68 Pectate lyase family protein (.1) AT5G63180 216 / 2e-68 Pectin lyase-like superfamily protein (.1) AT3G01270 215 / 2e-67 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030791 [exp] 358 / 1e-123 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 288 / 3e-96 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 285 / 6e-95 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 243 / 1e-78 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 242 / 5e-78 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 231 / 5e-76 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10033018 [exp] 231 / 4e-73 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 223 / 4e-71 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 221 / 1e-70 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148800 [exp] 262 / 3e-86 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 250 / 1e-81 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.017G078400 [exp] 247 / 7e-80 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 241 / 8e-78 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 216 / 2e-68 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.014G178100 [exp] 215 / 6e-68 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 214 / 7e-68 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 214 / 1e-67 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 213 / 1e-67 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 214 / 2e-67 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10013267 pacid=23166642 polypeptide=Lus10013267 locus=Lus10013267.g ID=Lus10013267.BGIv1.0 annot-version=v1.0 ATGATCCGGGACGTGGTGGATCACTATGGTCTCCGAACAAGAAGTGACAACGATGGAATGTATGGTGCAGCCAACGTGTGGTTCGACCACGTGTCGATGT CTAATTGTGCGGATGGAATCATTGATGCCGTCGTGGAGTCCACGGGGATCACCATCTCCAACGGTCATATCACTGACCACAATGAGGTGATGCTGTTTGG GGCTAGTGGAAGCTACTCGAAAAACACGATCATGCAAATCACGTTAGCATTCAACCATTTCGGTCACGGTTTAGTCCAAAGAATGCCGAGGTGTCGATGG GGTTTCTTCCATGTCGTCAACAATGACTACACGCATTGGCTAATGTACGCCATGGGTGGTAGCAACCATCCCACTATCATTAGCCAAGGCAATCACTTCA TCGCCCCCCAGAATATCGCCGCCAAAGAGTCAGTGCGAGCGACAATTGGTAACCCGAATATTCCGGTACTAGTACCAGGTGTCATTGAACCTTCCGGATC TCGCACGTTTACAAGTTACAACTATATATTATTGACAAGTGTCAAAACGGAACATGCACAACCATCCGAGTGGAAGCATTGGGACTGGATATCACAAGGC GATTTGATGATGAATGGTGCATTCTTTGTTCCTTCAGGAAACCCTCAAGTTGTAAACAAAATCACAAAGCAACAACGAATCAATCAAAAAGGCTAG
AA sequence Show only first row Show all	>Lus10013267 pacid=23166642 polypeptide=Lus10013267 locus=Lus10013267.g ID=Lus10013267.BGIv1.0 annot-version=v1.0 MIRDVVDHYGLRTRSDNDGMYGAANVWFDHVSMSNCADGIIDAVVESTGITISNGHITDHNEVMLFGASGSYSKNTIMQITLAFNHFGHGLVQRMPRCRW GFFHVVNNDYTHWLMYAMGGSNHPTIISQGNHFIAPQNIAAKESVRATIGNPNIPVLVPGVIEPSGSRTFTSYNYILLTSVKTEHAQPSEWKHWDWISQG DLMMNGAFFVPSGNPQVVNKITKQQRINQKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15110			Pectate lyase family protein (...		Lus10013267 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027322 [exp]	2.0	0.7352
AT1G11330			S-locus lectin protein kinase ...		Lus10038411 [exp]	6.5	0.6399
AT4G24900			unknown protein		Lus10024906 [exp]	7.0	0.6385
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10038344 [exp]	15.8	0.6851
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10003202 [exp]	18.2	0.5896
					Lus10028295 [exp]	19.6	0.6737
AT1G61440			S-locus lectin protein kinase ...		Lus10038413 [exp]	20.6	0.6530
AT1G50660			unknown protein		Lus10002072 [exp]	21.7	0.6555
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	28.3	0.6272
AT1G15780			unknown protein		Lus10025450 [exp]	36.1	0.6356

Compare expression of checked genes

Lus10013267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.