Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27000 254 / 6e-84 Protein of unknown function (DUF1664) (.1) AT2G02730 223 / 4e-72 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G04960 187 / 2e-57 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 96 / 9e-23 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 72 / 2e-14 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G44674 47 / 3e-07 Protein of unknown function (DUF1664) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036718 [exp] 414 / 1e-146 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 387 / 6e-135 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 401 / 2e-131 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10014626 [exp] 191 / 1e-58 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10033807 [exp] 136 / 1e-38 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10011347 [exp] 96 / 1e-22 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 95 / 1e-22 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092700 [exp] 327 / 3e-112 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 321 / 6e-110 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.014G160800 [exp] 200 / 9e-63 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.002G219300 [exp] 200 / 1e-62 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 110 / 7e-28 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.003G169200 [exp] 108 / 3e-27 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10013269 pacid=23166651 polypeptide=Lus10013269 locus=Lus10013269.g ID=Lus10013269.BGIv1.0 annot-version=v1.0 ATGGCCATGCAAGCTGCACTCAGTTCCCGCCTTCTTATACTTGGCGGAGCAGGTTATTTTGGTACCGTATTGTTCAAGAAAGGTAAATTATCCGACCTGA TCGGTGAGCTCCAGGCGTTGCTGAAGGGAATCGAGGGAGGCGATACTGATGGCGAATCTGGTCACGCTGACGCCATTGCTCAGCAGGTTAGTAGACTAGC ACAAGAGGTTCGCCAGCTCGCTTCTCAGAGGCAGATTACTGTTGTAAATGGGAATGGCCAGTCAGGTAATTTAACTGCTCTGATCATTCCTGGAGCTGCA ATTGGAGTAGCGGGTTATGGTTATATGAGGTGGAAGGGCATGCAATTTTCGGATCTTATGTATGTAACAAAGAGAAATATGACTGCTGCTGTTGCAAACT TGACGAAACATCTTGAGGACGTCACTGGTGCTCTGGCAAAAGCAAAGGAACATTTAACTCAGCGCATTCAAGGTTTGGACGATAAAATGGATGTTCAGAA GGAGATCTCAAAGGCAATTCAGAATGATGTCAATACTATCAATGAGAATATACAGCTCCTCGACTCCGACCTGTTCAATTTGCAGCGTATTGTTTCTGGT TTGGATGGAAAGATAGGTACGTTGGAGAACAAGCAGGATCTAGCGAATCTGGGAATCACTTATCTGTGCCACTTCGCTCAGGGAAAGAAATTGGCAATGC CTAAAGAGCTGAAGGGCCTGAAGGCGCTGATCGACGATTCTTTCTGCAAGTTGGTGACAGAAAATCTAGCTCGTACCGCAAGCGTTCCAAAGATCGATGC TGTCCAGGTGAACAACGAAGAGCCCTCACACTCACAGACCCCTCGCGAACCTCTATTGAGGTAA
AA sequence Show only first row Show all	>Lus10013269 pacid=23166651 polypeptide=Lus10013269 locus=Lus10013269.g ID=Lus10013269.BGIv1.0 annot-version=v1.0 MAMQAALSSRLLILGGAGYFGTVLFKKGKLSDLIGELQALLKGIEGGDTDGESGHADAIAQQVSRLAQEVRQLASQRQITVVNGNGQSGNLTALIIPGAA IGVAGYGYMRWKGMQFSDLMYVTKRNMTAAVANLTKHLEDVTGALAKAKEHLTQRIQGLDDKMDVQKEISKAIQNDVNTINENIQLLDSDLFNLQRIVSG LDGKIGTLENKQDLANLGITYLCHFAQGKKLAMPKELKGLKALIDDSFCKLVTENLARTASVPKIDAVQVNNEEPSHSQTPREPLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27000			Protein of unknown function (D...		Lus10013269 [exp]	0	1
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	5.5	0.5966
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	16.4	0.5974
AT4G15040			Subtilisin-like serine endopep...		Lus10028843 [exp]	24.4	0.5607
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	40.1	0.5632
AT5G01780			2-oxoglutarate-dependent dioxy...		Lus10009087 [exp]	42.8	0.5279
					Lus10020988 [exp]	48.4	0.5051
					Lus10022068 [exp]	62.6	0.5043
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10007595 [exp]	62.7	0.4917
AT5G16100			unknown protein		Lus10004035 [exp]	63.5	0.4911
					Lus10039435 [exp]	76.1	0.4948

Compare expression of checked genes

Lus10013269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.