Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69830 1159 / 0 ATAMY3, AMY3 alpha-amylase-like 3 (.1) AT1G76130 410 / 3e-135 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) AT4G25000 348 / 2e-111 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1) AT4G24450 45 / 0.0002 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT1G10760 44 / 0.0005 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030793 [exp] 1731 / 0 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10036717 [exp] 1369 / 0 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1) Lus10037211 [exp] 1366 / 0 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1) Lus10021836 [exp] 412 / 1e-135 AT1G76130 700 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Lus10042655 [exp] 357 / 2e-114 AT4G25000 567 / 0.0 alpha-amylase-like (.1) Lus10021728 [exp] 357 / 2e-114 AT4G25000 563 / 0.0 alpha-amylase-like (.1) Lus10013044 [exp] 57 / 1e-07 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 56 / 2e-07 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 52 / 4e-06 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092900 [exp] 1266 / 0 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1) Potri.017G093200 [exp] 523 / 1e-171 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1) Potri.002G014300 [exp] 417 / 2e-137 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1) Potri.014G029400 [exp] 396 / 1e-129 AT4G25000 580 / 0.0 alpha-amylase-like (.1) Potri.002G126300 [exp] 382 / 5e-124 AT4G25000 591 / 0.0 alpha-amylase-like (.1) Potri.010G044100 [exp] 49 / 1e-05 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 46 / 0.0002 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF07821 [flax] [poplar] Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10013270 pacid=23166612 polypeptide=Lus10013270 locus=Lus10013270.g ID=Lus10013270.BGIv1.0 annot-version=v1.0 ATGTTCTCCATCACCACCGTTGAGCCGATCATCCGATGTAATAATCGGCGGGAGATCCACGGATCACTCAAGGCTACGAAATTCTGCAGCTCATCTACTT CTTCTTCACTCAACTGTTTGCGGCAGAAGCGGTTAGTTCGCGCCAAGTTCGAGGAATGCAAGCTGCCTGTGCGTCGTGTTAAGGCTCCGGCCGTGATCAG AGCGAGTCGATCGTCGTCATCTTCTTCTTCCGGTACGGCTCTTCCCGAGACGTTTGAATCATCTGGAGATGTGTTCTTCAGGCAGAGCTTCCCTGTCACT CGAACTGAAACGGTTGATGGAAAGATATTTGTACGCGTAGATCAAAGTAACGCGAAAGGTGATTGGCAGCTAACTGTGGGATGCAATCTTCCTGGGAAAT GGATTCTTCATTGGGGAGTTTCTTATGTCAATGATAGTGGAAGCGAATGGGATCAACCTCCAAAGCACATGAGACCCCCTGGTTCGGTGCCAGTAAAGAA CTATGCAATAGATACGCCTTTAAAGAAACCATCCGTAGATGATCTATTCTACGAAGTGAAGATTGATATTGATCCCAAGAGTGCAATTGCTTCCATCAAT TTTGTCCTCAAGGATGAAGAAACCGGATCCTGGTATCAGCACAAGGGGAGAGATTTTAAGGTGCCTCTTGTGGATTACCTTCTTGATGATGGCAATTTTT TCGGCAGCAACAGCTTCAATATTTGGCCAGGGCCTTTTTTTACCAACATACTTCTCAAATCAGAAAGGCAAAACAATGTCAGCGAGCTCAACGAAAGTAG AACAGAAGATCGTCAGTTAGAAGGGATCTACGAAGAGCAACCCTTTACTAAACATACGACTCTTGAAAATTCAGTGACTGTTCTAGTTAGAAAGTGCCCT GAGACGTCGAAAAATCTTCTCTATCTTGAAACTGATCTTTCCGGTGTTGTTCTGCACTGGGGCGTGTGCAGAGACGATGCTAAGAATTGGGAAATTCCAT CTGGCCCTCATCCACCTGAAACCATCATCTTCAAAGAAAGGGCTCTGCGGACTAAGTTGCAGGCAAAGGACGATGGGCGTGGATGTTCAGGGTTATTTAC ATTGGATGAAGATATTGCAGGTTTTCTTTTTGTTCTCAAGCTAAATGATAATACTTGGTTCAAATGTATGGGAAATGACTTCTACATCCCACTCTCAAGT TCAAGTAGGTTGCTTGTTCAACCTGGACAGAAACATTCTGAAGATGCACCAGCCTCTGGAAAGGCTCCGGATGCAGATCAAGGTTCTGGTACTGCCTTCA CTGACGGCATAATTAAAGAAATAAGGAACTTGGTCAGTGGAATTTCTTCTGAGAACAGTCGAAAGGTAAAAACCAAAGAAGCACAAGAAAGCATTCTTCA GGAGATTGAGAAATTGGCTGCTGAAGCCTACAGTATCTTCAGAAGCTCCATACCAACTTTTAAAGAAGAGGTCGTTTTGGAAGAAGAGCTCGAGAAAGCT CCTCCTAAAAAATGCTCTGGTACAGGCAGTGGTTATGAAATATTGCTTCAAGGATTCAATTGGGAATCTCATAAATCTGGTCGATGGTATATGGATCTGA AAGAGAAAGCTGAAGATATAGCTTCACTTGGGTTCACGGTCATATGGTTGCCTCCACCTACAGAGTCGGTGTCCCCTGAAGGCTACATGCCTAAGGATTT ATATAATTTGAACTCAAGATATGGAAGAATAGATGAGCTCAAGGACCTCGTGGGAAGACTTCATGACTCAGGCATTAAAGTTCTTGGAGATGCTGTCCTG AACCATAGATGTGCGCACTATCAAAACAAAAATGGAATATGGAACATTTTTGGTGGTCGGTTAAGTTGGGATGATCGAGCGGTTGTTGCTGATGATCCAC ATTTCCAGGGTAGGGGAAACAAGAGCAGCGGGGACAATTTCCATGCTGCCCCGAACATTGATCATTCACAAGATTTCGTTAGGAAAGATATCAAAGAATG GATGGGATGGCTAAGAGAAGAAATTGGCTACGATGGTTGGCGGCTCGATTTCGTTAGAGGATTTTGGGGTGGCTATGTGAAGGATTACCTTGATGCGACC AACCCTTATTTTGCTGTCGGTGAGTACTGGGATTCCCTCAGTTATACTTATGGAGAAATGGACCACAATCAAGATGCACACCGTCAACGAATCATTGACT GGATCAACGCAACAAATGGATCCGCTGGTGCATTTGATGTCACGAGCAAAGGAGTTCTTCATGCGGCACTGGAAAAGTGTGAGTATTGGCGTTTAGCAGA TGAGAAGGGAAAGCCTCCAGGAGTTGTTGGATGGTGGCCATCTCGTGCTGTTACATTTGTCGAGAATCATGACACTGGCTCAACGCAGGGTCATTGGCGA TTCCCAGGAGGGAAGGAAATGCAAGGATACGCATACATCCTCACTCATCCAGGAACACCTGCAGTTTTCTTTGACCATATCTACTCCTCCAACTATCGCT CCGAAATCGCAGCTCTCATTGCCTTCAGAAACCGGCACAAACTCCACTGCCGCAGCGTAGTTAAAATCTCGAAGGCAGTGAATGACGTTTACGCAGCCAT CATCGATGACAAAGTAGCAATGAAAATCGGTCCAGGCCGTTTCGAACCCCCAAAGGGACCTCGTAAATGGTCACTGGCTCTCGAGGGAAGGGATTACAAG GTCTGGGCGGCATAG
AA sequence Show only first row Show all	>Lus10013270 pacid=23166612 polypeptide=Lus10013270 locus=Lus10013270.g ID=Lus10013270.BGIv1.0 annot-version=v1.0 MFSITTVEPIIRCNNRREIHGSLKATKFCSSSTSSSLNCLRQKRLVRAKFEECKLPVRRVKAPAVIRASRSSSSSSSGTALPETFESSGDVFFRQSFPVT RTETVDGKIFVRVDQSNAKGDWQLTVGCNLPGKWILHWGVSYVNDSGSEWDQPPKHMRPPGSVPVKNYAIDTPLKKPSVDDLFYEVKIDIDPKSAIASIN FVLKDEETGSWYQHKGRDFKVPLVDYLLDDGNFFGSNSFNIWPGPFFTNILLKSERQNNVSELNESRTEDRQLEGIYEEQPFTKHTTLENSVTVLVRKCP ETSKNLLYLETDLSGVVLHWGVCRDDAKNWEIPSGPHPPETIIFKERALRTKLQAKDDGRGCSGLFTLDEDIAGFLFVLKLNDNTWFKCMGNDFYIPLSS SSRLLVQPGQKHSEDAPASGKAPDADQGSGTAFTDGIIKEIRNLVSGISSENSRKVKTKEAQESILQEIEKLAAEAYSIFRSSIPTFKEEVVLEEELEKA PPKKCSGTGSGYEILLQGFNWESHKSGRWYMDLKEKAEDIASLGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGRIDELKDLVGRLHDSGIKVLGDAVL NHRCAHYQNKNGIWNIFGGRLSWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWMGWLREEIGYDGWRLDFVRGFWGGYVKDYLDAT NPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGSAGAFDVTSKGVLHAALEKCEYWRLADEKGKPPGVVGWWPSRAVTFVENHDTGSTQGHWR FPGGKEMQGYAYILTHPGTPAVFFDHIYSSNYRSEIAALIAFRNRHKLHCRSVVKISKAVNDVYAAIIDDKVAMKIGPGRFEPPKGPRKWSLALEGRDYK VWAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	0	1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	2.4	0.8887
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	2.4	0.8983
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	3.2	0.9023
AT1G34270			Exostosin family protein (.1)		Lus10031610 [exp]	4.9	0.8598
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	4.9	0.8908
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	6.2	0.8912
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	6.7	0.8775
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10023032 [exp]	7.3	0.8647
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	8.1	0.8902
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	8.8	0.8822

Compare expression of checked genes

Lus10013270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.