Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01280 401 / 2e-142 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G15090 376 / 1e-132 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT5G67500 267 / 1e-89 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G57490 258 / 3e-86 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 171 / 1e-52 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 89 / 2e-21 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030794 [exp] 528 / 0 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10015357 [exp] 389 / 1e-137 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 385 / 5e-136 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 334 / 2e-115 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 307 / 2e-104 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10019284 [exp] 251 / 3e-83 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 232 / 2e-75 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 224 / 1e-72 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 223 / 5e-72 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033500 [exp] 486 / 4e-176 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 486 / 4e-176 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.017G078200 [exp] 422 / 7e-151 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.006G169400 [exp] 275 / 7e-93 AT5G57490 394 / 1e-139 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.005G146800 [exp] 269 / 3e-90 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.018G093900 [exp] 267 / 1e-89 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) Potri.007G055800 [exp] 255 / 6e-85 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 241 / 3e-79 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.012G070300 [exp] 184 / 2e-57 AT3G01280 163 / 3e-49 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.001G294100 [exp] 178 / 4e-54 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [flax] [poplar] MBB PF01459 [flax] [poplar] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Lus10013271 pacid=23166607 polypeptide=Lus10013271 locus=Lus10013271.g ID=Lus10013271.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGTCCAGGACTCTACTCCGATATCGGCAAGAAATCTAGAGATCTTCTTTACAGGGATTATCAGTCGGACCACAAATTCACTCTCACTACCT ACACCGCCAATGGAGTCGCTATCACCTCGAGCGGTGTTAAGAAAGGTGAGCTGTTCTTGGCTGATGTGAGCAGTCAGCTGAAGAATAAGAACATCACCAC TGACCTGAAAGTAGACACCAATTCTAACCTATTCACTACCATCACCATTGATGAACCTGCTCCTGGATTGAAGGCAATCTTCAGTTTCAAAGTACCTGAG CAGAAATCTGGCAAGGTCGAACTCCAGTACCAGCATGAGTACCTTGGGATCAACACTAGCATTGGCTTGACCGCGAGTCCTCTTGCTAACTTCTCTGGCG TGGTTGGCAACAACATGGTTGCTCTCGGTACCGACCTCTGCTTCGATACCGCGTCTGGTAACTTCACCAAATTGAATGCTGGTTTGAGCTACACCACTTC TGACTTGATTGCTGCCCTCACCTTGAACAACAAGGGTGACTTGGTCACAGCATCCTACTACCACACTGTGAGCCCACTGACCAACACAGCCGTGGGAGCC GAGCTGACCCACAGCTTCTCGAGCAACGAGAACACTCTGACAGTCGGGACCCAGCATGCCCTCGACCCATTGACCACCATCAAGGGAAGAGTGAACAACT ACGGGAAAGCCAGTGCGCTCATCCAGCACGAGTTCCGCCCGAAGTCCCTCTTCACCATCTCAGGAGAGGTGGACACGAGGGCAATCGAGAAGAGCGCAAA GGTGGGTCTTGCAGTTGCCCTGAAGCCCTGA
AA sequence Show only first row Show all	>Lus10013271 pacid=23166607 polypeptide=Lus10013271 locus=Lus10013271.g ID=Lus10013271.BGIv1.0 annot-version=v1.0 MGKGPGLYSDIGKKSRDLLYRDYQSDHKFTLTTYTANGVAITSSGVKKGELFLADVSSQLKNKNITTDLKVDTNSNLFTTITIDEPAPGLKAIFSFKVPE QKSGKVELQYQHEYLGINTSIGLTASPLANFSGVVGNNMVALGTDLCFDTASGNFTKLNAGLSYTTSDLIAALTLNNKGDLVTASYYHTVSPLTNTAVGA ELTHSFSSNENTLTVGTQHALDPLTTIKGRVNNYGKASALIQHEFRPKSLFTISGEVDTRAIEKSAKVGLAVALKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	1.0	0.9830
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	3.5	0.9526
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	3.7	0.9613
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	4.9	0.9526
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	4.9	0.9359
					Lus10023559 [exp]	6.3	0.9484
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	7.4	0.9361
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	7.9	0.9417
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10041768 [exp]	7.9	0.9442
AT2G20420			ATP citrate lyase (ACL) family...		Lus10003620 [exp]	8.0	0.9434

Compare expression of checked genes

Lus10013271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.